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July 9, 2018 08:58
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| #!/bin/bash | |
| #rj name=Sort_NFH_p190 queue=idle logdir=000scratch/logs/10_script cpus=* mem=8000M io=1 schema=lineList.schema | |
| ########################### | |
| # Setup environment | |
| module add production | |
| module add processing | |
| module add prod | |
| module add Nemo | |
| # configure processing | |
| . processing || exit 100 | |
| # list currently loaded modules and their versions | |
| module list | |
| ########################### | |
| { | |
| # count job time | |
| startTime=$(date +%s) | |
| # defining input and output variables | |
| indirProd=/p8/santos/sS11blkPr_044/loadedData/navi/Sheemanto_3D/Sheemanto_3D_12cable_WGS84_UTM46N.nav | |
| indirNFH=/p8/santos/sS11blkPr_044/loadedData/navi/Sheemanto_3D/Sheemanto_3D_12cable_WGS84_UTM46N_NFH.nav/ORIG | |
| outdir=/p8/santos/sS11blkPr_044/loadedData/navi/Sheemanto_3D/Sheemanto_3D_12cable_WGS84_UTM46N_NFH.nav | |
| NFH_withoutTopHeaders=$outdir/NFH_withoutTopHeaders | |
| positionNFH=$outdir/positionNFH | |
| sourceNFH=$outdir/sourceNFH | |
| topHeaders=$outdir/topHeaders | |
| mkdir -p $outdir/NFH_withoutTopHeaders $outdir/positionNFH $outdir/sourceNFH $outdir/topHeaders | |
| # display required variables and input | |
| # display the output information | |
| dispVars indirProd indirNFH outdir | |
| # main program here || die "main program die" | |
| ## [TOP HEADERS] ## | |
| cat $indirNFH/${p190} | awk '/H0100SURVEY AREA Sheemanto 3D Block SS11/,/H2600 13 STREAMER MAPPING A 1 S1 S2 S3 S4 S5 S6 S7 S8 S9 S10 S11 S12/{print}' > $topHeaders/${line}_topHeaders.txt | |
| # ls $indirNFH | while read a; do cat $a | awk '/H0100SURVEY AREA Sheemanto 3D Block SS11/,/H2600 13 STREAMER MAPPING A 1 S1 S2 S3 S4 S5 S6 S7 S8 S9 S10 S11 S12/{print}' > $topHeaders/${a}.txt; done | |
| ## [NFH SOURCE HEADERS] ## | |
| cat $indirProd/${p190} | awk '/VS3D/,/R0001/{print}' | grep -v "R0001" > $sourceNFH/${line}_sourceNFH.txt | |
| # ls $indirProd | while read a; do cat $a | awk '/VS3D/,/R0001/{print}' | grep -v "R0001" > $sourceNFH/${a}.txt; done | |
| ## [NFH POSITION AND NFH GUN POSITION HEADERS] ## | |
| cat $indirNFH/${p190} | awk '/H2600GENERATED BY ORCA 1.12.1 NF HYDROPHONES POSITIONS/,/VS3D/{print}' | grep -v "VS3D" > $positionNFH/${line}_positionNFH.txt | |
| # ls $indirNFH | while read a; do cat $a | awk '/H2600GENERATED BY ORCA 1.12.1 NF HYDROPHONES POSITIONS/,/VS3D/{print}' | grep -v "VS3D" > $positionNFH/${a}.txt; done | |
| ## [NFH WITHOUT TOP HEADERS] ## | |
| awk ' | |
| FNR==NR{ | |
| if(FNR%37==0){ | |
| a[++i]=val ORS $0; | |
| val=""; | |
| next}; | |
| val=val?val ORS $0:$0; | |
| next | |
| } | |
| count==65{ | |
| print a[++j] ORS val; | |
| count=""; | |
| val=""} | |
| /H2600GENERATED BY ORCA 1.12.1 NF HYDROPHONES POSITIONS/,/H2600GENERATED BY ORCA 1.12.1 GUN POSITIONS$/{ | |
| count++} | |
| { | |
| val=val?val ORS $0:$0 | |
| } | |
| END{ | |
| if(count){ | |
| print a[++j] ORS val} | |
| }' $sourceNFH/${line}_sourceNFH.txt $positionNFH/${line}_positionNFH.txt > $NFH_withoutTopHeaders/${line}_withoutTopHeaders.txt | |
| #paste -d " " <(ls $sourceNFH) <(ls $positionNFH) | while read a b; do | |
| # awk ' | |
| # FNR==NR{ | |
| # if(FNR%37==0){ | |
| # a[++i]=val ORS $0; | |
| # val=""; | |
| # next}; | |
| # val=val?val ORS $0:$0; | |
| # next | |
| #} | |
| #count==65{ | |
| # print a[++j] ORS val; | |
| # count=""; | |
| # val=""} | |
| #/H2600GENERATED BY ORCA 1.12.1 NF HYDROPHONES POSITIONS/,/H2600GENERATED BY ORCA 1.12.1 GUN POSITIONS$/{ | |
| # count++} | |
| #{ | |
| # val=val?val ORS $0:$0 | |
| #} | |
| #END{ | |
| # if(count){ | |
| # print a[++j] ORS val} | |
| #}' $sourceNFH/${a} $positionNFH/${b} > $NFH_withoutTopHeaders/${a}_withoutTopHeaders.txt; done | |
| ## [COMPLETE NFH P190] ## | |
| cat $topHeaders/${line}_topHeaders.txt $NFH_withoutTopHeaders/${line}_withoutTopHeaders.txt | sed '/^$/d' > $outdir/${p190} | |
| # paste -d " " <(ls $topHeaders) <(ls $NFH_withoutTopHeaders) | while read a b; do $topHeaders/${a} $NFH_withoutTopHeaders/${b} | sed '/^$/d' > $indirNFH/${a}.p190; done | |
| # display the output information | |
| msg "output generated" | |
| msg "Program completed successfully at $PWD hooray! ^_^" | |
| # count job time | |
| endTime=$(date +%s) | |
| echo "$(basename $0): Total time = $((endTime-startTime)) seconds" | |
| printf ""%dh:%dm:%ds"\n" $(((endTime-startTime)/3600)) $(((endTime-startTime)%3600/60)) $(((endTime-startTime)%60)) | |
| } 2>&1 | dateout || exit 100 |
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