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COVID-19 hacking
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require(tidyverse) | |
original.data <- read_csv("https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_time_series/time_series_19-covid-Confirmed.csv") | |
# combined data with simple state column | |
data <- original.data %>% | |
filter(`Country/Region` == 'US') %>% | |
mutate(State = sub(".*,\ ", "", `Province/State`)) %>% | |
rowwise() %>% | |
mutate(State = ifelse(nchar(State) == 2, state.name[grep(State, state.abb)], `Province/State`)) %>% | |
ungroup() %>% | |
select_if(function(x) {is.character(x) || sum(x) != 0}) %>% | |
select(State, c(1:"State")) %>% | |
group_by(State) %>% | |
summarize_at(vars(-`Province/State`, -`Country/Region`, -Lat, -Long), ~sum(.)) %>% | |
ungroup() %>% | |
mutate(sumConfirmed = rowSums((.)[-c(1:4)])) %>% | |
select(c(State, sumConfirmed), everything()) | |
# simple confirmed cases plot, top 10 states | |
data %>% | |
arrange(desc(sumConfirmed)) %>% | |
top_n(10) %>% | |
select(-sumConfirmed) %>% | |
group_by(State) %>% | |
gather(key = "date", value="nConfirmed", -c(State)) %>% | |
mutate(date = as.Date(date, format="%m/%d/%y")) %>% | |
mutate(log.nConfirmed = log(nConfirmed)) %>% | |
ggplot(aes(x=date, y=nConfirmed, color=State)) + | |
geom_line() |
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{ | |
"objectIdFieldName": "OBJECTID", | |
"uniqueIdField": { | |
"name": "OBJECTID", | |
"isSystemMaintained": true | |
}, | |
"globalIdFieldName": "", | |
"geometryType": "esriGeometryPoint", | |
"spatialReference": { | |
"wkid": 102100, | |
"latestWkid": 3857 | |
}, | |
"fields": [ | |
{ | |
"name": "OBJECTID", | |
"type": "esriFieldTypeOID", | |
"alias": "OBJECTID", | |
"sqlType": "sqlTypeOther", | |
"domain": null, | |
"defaultValue": null | |
}, | |
{ | |
"name": "Country_Region", | |
"type": "esriFieldTypeString", | |
"alias": "Country_Region", | |
"sqlType": "sqlTypeOther", | |
"length": 8000, | |
"domain": null, | |
"defaultValue": null | |
}, | |
{ | |
"name": "Last_Update", | |
"type": "esriFieldTypeDate", | |
"alias": "Last_Update", | |
"sqlType": "sqlTypeOther", | |
"length": 8, | |
"domain": null, | |
"defaultValue": null | |
}, | |
{ | |
"name": "Lat", | |
"type": "esriFieldTypeDouble", | |
"alias": "Lat", | |
"sqlType": "sqlTypeOther", | |
"domain": null, | |
"defaultValue": null | |
}, | |
{ | |
"name": "Long_", | |
"type": "esriFieldTypeDouble", | |
"alias": "Long", | |
"sqlType": "sqlTypeOther", | |
"domain": null, | |
"defaultValue": null | |
}, | |
{ | |
"name": "Confirmed", | |
"type": "esriFieldTypeInteger", | |
"alias": "Confirmed", | |
"sqlType": "sqlTypeOther", | |
"domain": null, | |
"defaultValue": null | |
}, | |
{ | |
"name": "Deaths", | |
"type": "esriFieldTypeInteger", | |
"alias": "Deaths", | |
"sqlType": "sqlTypeOther", | |
"domain": null, | |
"defaultValue": null | |
}, | |
{ | |
"name": "Recovered", | |
"type": "esriFieldTypeInteger", | |
"alias": "Recovered", | |
"sqlType": "sqlTypeOther", | |
"domain": null, | |
"defaultValue": null | |
}, | |
{ | |
"name": "Active", | |
"type": "esriFieldTypeInteger", | |
"alias": "Active", | |
"sqlType": "sqlTypeOther", | |
"domain": null, | |
"defaultValue": null | |
} | |
], | |
"features": [ | |
{ | |
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} | |
}, | |
{ | |
"attributes": { | |
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"Country_Region": "Italy", | |
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} | |
}, | |
{ | |
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"Active": 8624 | |
} | |
}, | |
{ | |
"attributes": { | |
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} | |
}, | |
{ | |
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"Deaths": 292, | |
"Recovered": 517, | |
"Active": 7035 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 17, | |
"Country_Region": "Germany", | |
"Last_Update": 1584324795000, | |
"Lat": 51.1657, | |
"Long_": 10.4515, | |
"Confirmed": 5813, | |
"Deaths": 13, | |
"Recovered": 46, | |
"Active": 5754 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 44, | |
"Country_Region": "France", | |
"Last_Update": 1584203583000, | |
"Lat": 17.9, | |
"Long_": -62.8333, | |
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} | |
}, | |
{ | |
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} | |
}, | |
{ | |
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} | |
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{ | |
"attributes": { | |
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} | |
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{ | |
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"Recovered": 21, | |
"Active": 1339 | |
} | |
}, | |
{ | |
"attributes": { | |
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"Lat": 60.472, | |
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"Recovered": 1, | |
"Active": 1252 | |
} | |
}, | |
{ | |
"attributes": { | |
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"Country_Region": "Netherlands", | |
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} | |
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} | |
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{ | |
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} | |
}, | |
{ | |
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"Country_Region": "Malaysia", | |
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} | |
}, | |
{ | |
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} | |
}, | |
{ | |
"attributes": { | |
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"Country_Region": "Canada", | |
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} | |
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{ | |
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} | |
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"Country_Region": "Portugal", | |
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} | |
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} | |
}, | |
{ | |
"attributes": { | |
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"Country_Region": "Singapore", | |
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} | |
}, | |
{ | |
"attributes": { | |
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"Country_Region": "Slovenia", | |
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"Deaths": 1, | |
"Recovered": 0, | |
"Active": 218 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 11, | |
"Country_Region": "Bahrain", | |
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"Lat": 26.0667, | |
"Long_": 50.5577, | |
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} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 73, | |
"Country_Region": "Brazil", | |
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"Lat": -14.235, | |
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"Active": 199 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 126, | |
"Country_Region": "Iceland", | |
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"Lat": 64.9631, | |
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"Recovered": 0, | |
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} | |
}, | |
{ | |
"attributes": { | |
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"Country_Region": "Estonia", | |
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"Lat": 58.5953, | |
"Long_": 25.0136, | |
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"Deaths": 0, | |
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"Active": 170 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 93, | |
"Country_Region": "Philippines", | |
"Last_Update": 1584322383000, | |
"Lat": 12.8797, | |
"Long_": 121.774, | |
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"Deaths": 12, | |
"Recovered": 2, | |
"Active": 126 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 65, | |
"Country_Region": "Romania", | |
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"Active": 130 | |
} | |
}, | |
{ | |
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"Country_Region": "Ireland", | |
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"Lat": 53.1424, | |
"Long_": -7.6921, | |
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} | |
}, | |
{ | |
"attributes": { | |
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"Long_": 30.8025, | |
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"Deaths": 2, | |
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} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 133, | |
"Country_Region": "Poland", | |
"Last_Update": 1584322383000, | |
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"Long_": 19.1451, | |
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"Deaths": 3, | |
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"Active": 109 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 90, | |
"Country_Region": "Iraq", | |
"Last_Update": 1584324795000, | |
"Lat": 33.2232, | |
"Long_": 43.6793, | |
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"Deaths": 10, | |
"Recovered": 26, | |
"Active": 88 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 12, | |
"Country_Region": "Saudi Arabia", | |
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"Lat": 23.8859, | |
"Long_": 45.0792, | |
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"Deaths": 0, | |
"Recovered": 2, | |
"Active": 116 | |
} | |
}, | |
{ | |
"attributes": { | |
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"Country_Region": "Indonesia", | |
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} | |
}, | |
{ | |
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"Country_Region": "Thailand", | |
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"Deaths": 1, | |
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"Active": 78 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 32, | |
"Country_Region": "India", | |
"Last_Update": 1584318131000, | |
"Lat": 20.5937, | |
"Long_": 78.9629, | |
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} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 120, | |
"Country_Region": "Kuwait", | |
"Last_Update": 1584323583000, | |
"Lat": 29.3117, | |
"Long_": 47.4818, | |
"Confirmed": 112, | |
"Deaths": 0, | |
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"Active": 103 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 42, | |
"Country_Region": "San Marino", | |
"Last_Update": 1584322383000, | |
"Lat": 43.9424, | |
"Long_": 12.4578, | |
"Confirmed": 109, | |
"Deaths": 7, | |
"Recovered": 4, | |
"Active": 98 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 105, | |
"Country_Region": "Lebanon", | |
"Last_Update": 1584318131000, | |
"Lat": 33.8547, | |
"Long_": 35.8623, | |
"Confirmed": 99, | |
"Deaths": 3, | |
"Recovered": 1, | |
"Active": 95 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 29, | |
"Country_Region": "United Arab Emirates", | |
"Last_Update": 1584318131000, | |
"Lat": 23.4241, | |
"Long_": 53.8478, | |
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"Deaths": 0, | |
"Recovered": 23, | |
"Active": 75 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 77, | |
"Country_Region": "Luxembourg", | |
"Last_Update": 1584323583000, | |
"Lat": 49.8153, | |
"Long_": 6.1296, | |
"Confirmed": 77, | |
"Deaths": 1, | |
"Recovered": 0, | |
"Active": 76 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 87, | |
"Country_Region": "Chile", | |
"Last_Update": 1584325988000, | |
"Lat": -35.6751, | |
"Long_": -71.543, | |
"Confirmed": 75, | |
"Deaths": 0, | |
"Recovered": 0, | |
"Active": 75 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 47, | |
"Country_Region": "Peru", | |
"Last_Update": 1584322383000, | |
"Lat": -9.19, | |
"Long_": -75.0152, | |
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"Deaths": 0, | |
"Recovered": 0, | |
"Active": 71 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 63, | |
"Country_Region": "Russia", | |
"Last_Update": 1584296418000, | |
"Lat": 61.524, | |
"Long_": 105.3188, | |
"Confirmed": 63, | |
"Deaths": 0, | |
"Recovered": 8, | |
"Active": 55 | |
} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 46, | |
"Country_Region": "Slovakia", | |
"Last_Update": 1584321192000, | |
"Lat": 48.669, | |
"Long_": 19.699, | |
"Confirmed": 61, | |
"Deaths": 0, | |
"Recovered": 0, | |
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} | |
}, | |
{ | |
"attributes": { | |
"OBJECTID": 67, | |
"Country_Region": "South Africa", | |
"Last_Update": 1584321192000, | |
"Lat": -30.5595, | |
"Long_": 22.9375, | |
"Confirmed": 61, | |
"Deaths": 0, | |
"Recovered": 0, | |
"Active": 61 | |
} | |
}, | |
{ | |
"attributes": { | |
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