Created
September 19, 2024 02:06
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error with attempt to install impute from bioc.r-universe.dev
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| setup: | |
| > options(repos=c(BioCsoft="https://bioc.r-universe.dev", CRAN="https://cloud.r-project.org")) | |
| > getOption("repos") | |
| BioCsoft CRAN | |
| "https://bioc.r-universe.dev" "https://cloud.r-project.org" | |
| > install.packages("impute") | |
| Installing package into ‘/Users/papa/Library/R/arm64/4.4/library’ | |
| (as ‘lib’ is unspecified) | |
| trying URL 'https://bioc.r-universe.dev/bin/macosx/big-sur-arm64/contrib/4.4/impute_1.79.0.tgz' | |
| Content type 'application/x-gzip' length 661436 bytes (645 KB) | |
| ================================================== | |
| downloaded 645 KB | |
| The downloaded binary packages are in | |
| /var/folders/x3/y47x73xn0s3cd4hh22jpl4440000gp/T//RtmpPYveh1/downloaded_packages | |
| > library(impute) | |
| Error: package or namespace load failed for ‘impute’ in dyn.load(file, DLLpath = DLLpath, ...): | |
| unable to load shared object '/Users/papa/Library/R/arm64/4.4/library/impute/libs/impute.so': | |
| dlopen(/Users/papa/Library/R/arm64/4.4/library/impute/libs/impute.so, 0x0006): Library not loaded: /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5.dylib | |
| Referenced from: <A86FE63B-0C87-3374-B7F7-CCEBCE31F747> /Users/papa/Library/R/arm64/4.4/library/impute/libs/impute.so | |
| Reason: tried: '/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5.dylib' (no such file), '/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5.dylib' (no such file), '/usr/local/lib/libgfortran.5.dylib' (no such file), '/usr/lib/libgfortran.5.dylib' (no such file, not in dyld cache) | |
| Enter a frame number, or 0 to exit | |
| 1: library(impute) | |
| 2: tryCatch({ | |
| attr(package, "LibPath") <- which.lib.loc | |
| ns <- loadNames | |
| 3: tryCatchList(expr, classes, parentenv, handlers) | |
| 4: tryCatchOne(expr, names, parentenv, handlers[[1]]) | |
| 5: value[[3]](cond) | |
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