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# Merge DeepVariant gVCFs without any filtering or genotype revision. | |
unifier_config: | |
min_AQ1: 0 | |
min_AQ2: 0 | |
min_GQ: 0 | |
monoallelic_sites_for_lost_alleles: true | |
max_alleles_per_site: 32 | |
genotyper_config: | |
required_dp: 0 | |
revise_genotypes: false | |
allow_partial_data: true | |
more_PL: true | |
trim_uncalled_alleles: true | |
liftover_fields: | |
- orig_names: [MIN_DP, DP] | |
name: DP | |
description: '##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">' | |
type: int | |
combi_method: min | |
number: basic | |
count: 1 | |
ignore_non_variants: true | |
- orig_names: [AD] | |
name: AD | |
description: '##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">' | |
type: int | |
number: alleles | |
combi_method: min | |
default_type: zero | |
count: 0 | |
- orig_names: [GQ] | |
name: GQ | |
description: '##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">' | |
type: int | |
number: basic | |
combi_method: min | |
count: 1 | |
ignore_non_variants: true | |
- orig_names: [PL] | |
name: PL | |
description: '##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype Likelihoods">' | |
type: int | |
number: genotype | |
combi_method: missing | |
count: 0 | |
ignore_non_variants: true |
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