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October 4, 2021 21:58
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Pooled Sleep & PA GGIR shell
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g.shell.GGIR( | |
mode=c(1,2,3,4,5), | |
datadir=datadir, | |
outputdir=outdir, | |
do.report=c(2,4,5), | |
overwrite = TRUE, | |
do.enmo = TRUE, | |
do.hfen = TRUE, | |
do.enmoa = TRUE, | |
#===================== | |
# Part 2 | |
#===================== | |
strategy = 2, | |
maxdur = 0, | |
includedaycrit = 16, | |
qwindow=c(0,24), | |
mvpathreshold = 100, | |
bout.metric = 4, | |
excludefirstlast = TRUE, | |
includenightcrit = 16, | |
MX.ig.min.dur = 10, | |
iglevels = 50, | |
epochvalues2csv = FALSE, | |
winhr = 16, | |
qlevels = c( | |
960/1440, # 2/3rds of the day | |
1320/1440, # Top 120min | |
1380/1440, # Top 60min | |
1410/1440, # Top 30min | |
1425/1440, # Top 15min | |
1435/1440 # Top 5min | |
), | |
#===================== | |
# Part 3 + 4 | |
#===================== | |
def.noc.sleep = 1, | |
outliers.only = TRUE, | |
criterror = 4, | |
do.visual = TRUE, | |
#===================== | |
# Part 5 | |
#===================== | |
threshold.lig = c( | |
44.8, # Adults - AG wrist | |
47.4, # Adults - AG hip | |
46.9, # Adults - GA hip | |
45.8, # Adults - GA wrist | |
63.3, # Child - AG hip | |
64.1, # Child - GA hip | |
56.3, # Child - GA wrist | |
35.6 # Child - AG wrist | |
), | |
threshold.mod = c( | |
61.1, # Adults - AG hip | |
68.7, # Adults - GA hip | |
93.2, # Adults - GA wrist | |
100.6, # Adults - AG wrist | |
142.6, # Child - AG hip | |
152.8, # Child - GA hip | |
191.6, # Child - GA wrist | |
201.4 # Child - AG wrist | |
), | |
threshold.vig = c( | |
258.7, # Adults - AG hip | |
266.8, # Adults - GA hip | |
418.3, # Adults - GA wrist | |
428.8, # Adults - AG wrist | |
464.6, # Child - AG hip | |
514.3, # Child - GA hip | |
695.8, # Child - GA wrist | |
707.0 # Child - AG wrist | |
), | |
boutcriter = 0.8, boutcriter.in = 0.9, boutcriter.lig = 0.8, | |
boutcriter.mvpa = 0.8, boutdur.in = c(1,10,30), boutdur.lig = c(1,10), | |
boutdur.mvpa = c(1), | |
includedaycrit.part5 = 2/3, | |
#===================== | |
# Visual report | |
#===================== | |
timewindow = c("WW"), | |
visualreport=FALSE) |
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Added
winhr = 16
, per Rowland's suggestion to do IG for most active 16 hours.