Created
August 16, 2011 00:28
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| Compilation failed in require at -e line 1. | |
| # Failed test 'Bio::Coordinate::MapperI loaded ok' | |
| # at t/00-compile.t line 48. | |
| # '' | |
| # doesn't match '(?s-xim:^\s*Bio::Coordinate::MapperI ok)' | |
| Can't locate Bio/Root/Version.pm in @INC (@INC contains: lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| Compilation failed in require at (eval 12) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| Compilation failed in require at (eval 2) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at lib/Bio/Coordinate/Result.pm line 28. | |
| Compilation failed in require at lib/Bio/Coordinate/Pair.pm line 28. | |
| BEGIN failed--compilation aborted at lib/Bio/Coordinate/Pair.pm line 28. | |
| Compilation failed in require at -e line 1. | |
| t/00-compile.t ......................... 7/12 | |
| # Failed test 'Bio::Coordinate::Pair loaded ok' | |
| # at t/00-compile.t line 48. | |
| # '' | |
| # doesn't match '(?s-xim:^\s*Bio::Coordinate::Pair ok)' | |
| Can't locate Bio/Root/Version.pm in @INC (@INC contains: lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| Compilation failed in require at (eval 12) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| Compilation failed in require at (eval 2) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at lib/Bio/Coordinate/Result.pm line 28. | |
| Compilation failed in require at -e line 1. | |
| # Failed test 'Bio::Coordinate::Result loaded ok' | |
| # at t/00-compile.t line 48. | |
| # '' | |
| # doesn't match '(?s-xim:^\s*Bio::Coordinate::Result ok)' | |
| Can't locate Bio/Root/Version.pm in @INC (@INC contains: lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| Compilation failed in require at (eval 14) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| Compilation failed in require at (eval 4) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/WidestCoordPolicy.pm line 28. | |
| Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| Compilation failed in require at (eval 3) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Simple.pm line 25. | |
| Compilation failed in require at (eval 2) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at lib/Bio/Coordinate/Result/Gap.pm line 26. | |
| Compilation failed in require at -e line 1. | |
| # Failed test 'Bio::Coordinate::Result::Gap loaded ok' | |
| # at t/00-compile.t line 48. | |
| # '' | |
| # doesn't match '(?s-xim:^\s*Bio::Coordinate::Result::Gap ok)' | |
| Can't locate Bio/Root/Version.pm in @INC (@INC contains: lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| Compilation failed in require at (eval 14) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| Compilation failed in require at (eval 4) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/WidestCoordPolicy.pm line 28. | |
| Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| Compilation failed in require at (eval 3) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Simple.pm line 25. | |
| Compilation failed in require at (eval 2) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at lib/Bio/Coordinate/Result/Match.pm line 26. | |
| Compilation failed in require at -e line 1. | |
| # Failed test 'Bio::Coordinate::Result::Match loaded ok' | |
| # at t/00-compile.t line 48. | |
| # '' | |
| # doesn't match '(?s-xim:^\s*Bio::Coordinate::Result::Match ok)' | |
| Base class package "Bio::LocationI" is empty. | |
| (Perhaps you need to 'use' the module which defines that package first, | |
| or make that module available in @INC (@INC contains: lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .). | |
| at lib/Bio/Coordinate/ResultI.pm line 29 | |
| BEGIN failed--compilation aborted at lib/Bio/Coordinate/ResultI.pm line 29. | |
| Compilation failed in require at -e line 1. | |
| # Failed test 'Bio::Coordinate::ResultI loaded ok' | |
| # at t/00-compile.t line 48. | |
| # '' | |
| # doesn't match '(?s-xim:^\s*Bio::Coordinate::ResultI ok)' | |
| Can't locate Bio/Root/Version.pm in @INC (@INC contains: lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| Compilation failed in require at (eval 13) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| Compilation failed in require at (eval 3) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/WidestCoordPolicy.pm line 28. | |
| Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| Compilation failed in require at (eval 2) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Simple.pm line 25. | |
| Compilation failed in require at lib/Bio/Coordinate/Utils.pm line 27. | |
| BEGIN failed--compilation aborted at lib/Bio/Coordinate/Utils.pm line 27. | |
| Compilation failed in require at -e line 1. | |
| # Failed test 'Bio::Coordinate::Utils loaded ok' | |
| # at t/00-compile.t line 48. | |
| # '' | |
| # doesn't match '(?s-xim:^\s*Bio::Coordinate::Utils ok)' | |
| # Looks like you failed 12 tests of 12. | |
| t/00-compile.t ......................... Dubious, test returned 12 (wstat 3072, 0xc00) | |
| Failed 12/12 subtests | |
| t/Coordinate/CoordinateBoundaryTest.t .. 1/174 | |
| # Failed test 'use Bio::Location::Simple;' | |
| # at t/Coordinate/CoordinateBoundaryTest.t line 13. | |
| # Tried to use 'Bio::Location::Simple'. | |
| # Error: Can't locate Bio/Root/Version.pm in @INC (@INC contains: . /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| # Compilation failed in require at (eval 22) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| # Compilation failed in require at (eval 19) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/WidestCoordPolicy.pm line 28. | |
| # Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| # Compilation failed in require at (eval 18) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Simple.pm line 25. | |
| # Compilation failed in require at (eval 17) line 2. | |
| # BEGIN failed--compilation aborted at (eval 17) line 2. | |
| # Failed test 'use Bio::Coordinate::Pair;' | |
| # at t/Coordinate/CoordinateBoundaryTest.t line 14. | |
| # Tried to use 'Bio::Coordinate::Pair'. | |
| # Error: Attempt to reload Bio/Root/Root.pm aborted. | |
| # Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| # Compilation failed in require at (eval 24) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Result.pm line 28. | |
| # Compilation failed in require at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Pair.pm line 28. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Pair.pm line 28. | |
| # Compilation failed in require at (eval 23) line 2. | |
| # BEGIN failed--compilation aborted at (eval 23) line 2. | |
| Can't locate object method "new" via package "Bio::Location::Simple" at t/Coordinate/CoordinateBoundaryTest.t line 21. | |
| # Looks like you planned 174 tests but ran 2. | |
| # Looks like you failed 2 tests of 2 run. | |
| # Looks like your test exited with 255 just after 2. | |
| t/Coordinate/CoordinateBoundaryTest.t .. Dubious, test returned 255 (wstat 65280, 0xff00) | |
| Failed 174/174 subtests | |
| t/Coordinate/CoordinateGraph.t ......... 1/7 | |
| # Failed test 'use Bio::Coordinate::Graph;' | |
| # at t/Coordinate/CoordinateGraph.t line 12. | |
| # Tried to use 'Bio::Coordinate::Graph'. | |
| # Error: Can't locate Bio/Root/Version.pm in @INC (@INC contains: . /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| # Compilation failed in require at (eval 21) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| # Compilation failed in require at (eval 18) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Graph.pm line 29. | |
| # Compilation failed in require at (eval 17) line 2. | |
| # BEGIN failed--compilation aborted at (eval 17) line 2. | |
| Can't locate object method "new" via package "Bio::Coordinate::Graph" at t/Coordinate/CoordinateGraph.t line 15. | |
| # Looks like you planned 7 tests but ran 1. | |
| # Looks like you failed 1 test of 1 run. | |
| # Looks like your test exited with 255 just after 1. | |
| t/Coordinate/CoordinateGraph.t ......... Dubious, test returned 255 (wstat 65280, 0xff00) | |
| Failed 7/7 subtests | |
| t/Coordinate/CoordinateMapper.t ........ 1/175 | |
| # Failed test 'use Bio::Location::Simple;' | |
| # at t/Coordinate/CoordinateMapper.t line 12. | |
| # Tried to use 'Bio::Location::Simple'. | |
| # Error: Can't locate Bio/Root/Version.pm in @INC (@INC contains: . /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| # Compilation failed in require at (eval 22) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| # Compilation failed in require at (eval 19) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/WidestCoordPolicy.pm line 28. | |
| # Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| # Compilation failed in require at (eval 18) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Simple.pm line 25. | |
| # Compilation failed in require at (eval 17) line 2. | |
| # BEGIN failed--compilation aborted at (eval 17) line 2. | |
| # Failed test 'use Bio::Coordinate::Pair;' | |
| # at t/Coordinate/CoordinateMapper.t line 13. | |
| # Tried to use 'Bio::Coordinate::Pair'. | |
| # Error: Attempt to reload Bio/Root/Root.pm aborted. | |
| # Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| # Compilation failed in require at (eval 24) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Result.pm line 28. | |
| # Compilation failed in require at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Pair.pm line 28. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Pair.pm line 28. | |
| # Compilation failed in require at (eval 23) line 2. | |
| # BEGIN failed--compilation aborted at (eval 23) line 2. | |
| # Failed test 'use Bio::Coordinate::Result::Match;' | |
| # at t/Coordinate/CoordinateMapper.t line 14. | |
| # Tried to use 'Bio::Coordinate::Result::Match'. | |
| # Error: Base class package "Bio::LocationI" is empty. | |
| # (Perhaps you need to 'use' the module which defines that package first, | |
| # or make that module available in @INC (@INC contains: . /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl). | |
| # at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/ResultI.pm line 29 | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/ResultI.pm line 29. | |
| # Compilation failed in require at (eval 26) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Result/Match.pm line 26. | |
| # Compilation failed in require at (eval 25) line 2. | |
| # BEGIN failed--compilation aborted at (eval 25) line 2. | |
| # Failed test 'use Bio::Coordinate::Chain;' | |
| # at t/Coordinate/CoordinateMapper.t line 16. | |
| # Tried to use 'Bio::Coordinate::Chain'. | |
| # Error: Attempt to reload Bio/Root/Root.pm aborted. | |
| # Compilation failed in require at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Chain.pm line 28. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Chain.pm line 28. | |
| # Compilation failed in require at (eval 29) line 2. | |
| # BEGIN failed--compilation aborted at (eval 29) line 2. | |
| # Failed test 'use Bio::Coordinate::Collection;' | |
| # at t/Coordinate/CoordinateMapper.t line 17. | |
| # Tried to use 'Bio::Coordinate::Collection'. | |
| # Error: Attempt to reload Bio/Coordinate/Result.pm aborted. | |
| # Compilation failed in require at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Collection.pm line 28. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Collection.pm line 28. | |
| # Compilation failed in require at (eval 30) line 2. | |
| # BEGIN failed--compilation aborted at (eval 30) line 2. | |
| Attempt to reload Bio/Location/Simple.pm aborted. | |
| Compilation failed in require at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Utils.pm line 27. | |
| BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Utils.pm line 27. | |
| Compilation failed in require at t/Coordinate/CoordinateMapper.t line 495. | |
| BEGIN failed--compilation aborted at t/Coordinate/CoordinateMapper.t line 495. | |
| # Looks like you planned 175 tests but ran 6. | |
| # Looks like you failed 5 tests of 6 run. | |
| # Looks like your test exited with 9 just after 6. | |
| t/Coordinate/CoordinateMapper.t ........ Dubious, test returned 9 (wstat 2304, 0x900) | |
| Failed 174/175 subtests | |
| t/Coordinate/GeneCoordinateMapper.t .... 1/116 | |
| # Failed test 'use Bio::Location::Simple;' | |
| # at t/Coordinate/GeneCoordinateMapper.t line 12. | |
| # Tried to use 'Bio::Location::Simple'. | |
| # Error: Can't locate Bio/Root/Version.pm in @INC (@INC contains: . /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/arch /home/sheena-warrior/cpan-lib/lib/perl5/i486-linux-gnu-thread-multi /home/sheena-warrior/cpan-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl) at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/RootI.pm line 35. | |
| # Compilation failed in require at (eval 22) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Root/Root.pm line 18. | |
| # Compilation failed in require at (eval 19) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/WidestCoordPolicy.pm line 28. | |
| # Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Atomic.pm line 25. | |
| # Compilation failed in require at (eval 18) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Simple.pm line 25. | |
| # Compilation failed in require at (eval 17) line 2. | |
| # BEGIN failed--compilation aborted at (eval 17) line 2. | |
| # Failed test 'use Bio::Coordinate::Pair;' | |
| # at t/Coordinate/GeneCoordinateMapper.t line 13. | |
| # Tried to use 'Bio::Coordinate::Pair'. | |
| # Error: Attempt to reload Bio/Root/Root.pm aborted. | |
| # Compilation failed in require at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/cpan-lib/lib/perl5/Bio/Location/Split.pm line 26. | |
| # Compilation failed in require at (eval 24) line 3. | |
| # ...propagated at /usr/share/perl/5.10/base.pm line 93. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Result.pm line 28. | |
| # Compilation failed in require at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Pair.pm line 28. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/Pair.pm line 28. | |
| # Compilation failed in require at (eval 23) line 2. | |
| # BEGIN failed--compilation aborted at (eval 23) line 2. | |
| # Failed test 'use Bio::Coordinate::ExtrapolatingPair;' | |
| # at t/Coordinate/GeneCoordinateMapper.t line 14. | |
| # Tried to use 'Bio::Coordinate::ExtrapolatingPair'. | |
| # Error: Attempt to reload Bio/Root/Root.pm aborted. | |
| # Compilation failed in require at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/ExtrapolatingPair.pm line 28. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/ExtrapolatingPair.pm line 28. | |
| # Compilation failed in require at (eval 25) line 2. | |
| # BEGIN failed--compilation aborted at (eval 25) line 2. | |
| # Failed test 'use Bio::Coordinate::GeneMapper;' | |
| # at t/Coordinate/GeneCoordinateMapper.t line 15. | |
| # Tried to use 'Bio::Coordinate::GeneMapper'. | |
| # Error: Attempt to reload Bio/Coordinate/Result.pm aborted. | |
| # Compilation failed in require at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/GeneMapper.pm line 31. | |
| # BEGIN failed--compilation aborted at /home/sheena-warrior/bioperl-tmp/.build/FO3G3tO_Js/blib/lib/Bio/Coordinate/GeneMapper.pm line 31. | |
| # Compilation failed in require at (eval 26) line 2. | |
| # BEGIN failed--compilation aborted at (eval 26) line 2. | |
| Can't locate object method "new" via package "Bio::Location::Simple" at t/Coordinate/GeneCoordinateMapper.t line 28. | |
| # Looks like you planned 116 tests but ran 4. | |
| # Looks like you failed 4 tests of 4 run. | |
| # Looks like your test exited with 255 just after 4. | |
| t/Coordinate/GeneCoordinateMapper.t .... Dubious, test returned 255 (wstat 65280, 0xff00) | |
| Failed 116/116 subtests | |
| t/release-eol.t ........................ skipped: these tests are for release candidate testing | |
| t/release-no-tabs.t .................... skipped: these tests are for release candidate testing | |
| t/release-pod-coverage.t ............... skipped: these tests are for release candidate testing | |
| t/release-pod-syntax.t ................. skipped: these tests are for release candidate testing | |
| Test Summary Report | |
| ------------------- | |
| t/00-compile.t (Wstat: 3072 Tests: 12 Failed: 12) | |
| Failed tests: 1-12 | |
| Non-zero exit status: 12 | |
| t/Coordinate/CoordinateBoundaryTest.t (Wstat: 65280 Tests: 2 Failed: 2) | |
| Failed tests: 1-2 | |
| Non-zero exit status: 255 | |
| Parse errors: Bad plan. You planned 174 tests but ran 2. | |
| t/Coordinate/CoordinateGraph.t (Wstat: 65280 Tests: 1 Failed: 1) | |
| Failed test: 1 | |
| Non-zero exit status: 255 | |
| Parse errors: Bad plan. You planned 7 tests but ran 1. | |
| t/Coordinate/CoordinateMapper.t (Wstat: 2304 Tests: 6 Failed: 5) | |
| Failed tests: 1-3, 5-6 | |
| Non-zero exit status: 9 | |
| Parse errors: Bad plan. You planned 175 tests but ran 6. | |
| t/Coordinate/GeneCoordinateMapper.t (Wstat: 65280 Tests: 4 Failed: 4) | |
| Failed tests: 1-4 | |
| Non-zero exit status: 255 | |
| Parse errors: Bad plan. You planned 116 tests but ran 4. | |
| Files=9, Tests=25, 1 wallclock secs ( 0.04 usr 0.02 sys + 1.01 cusr 0.22 csys = 1.29 CPU) | |
| Result: FAIL | |
| Failed 5/9 test programs. 24/25 subtests failed. | |
| make: *** [test_dynamic] Error 255 | |
| error running make test |
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