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Created March 20, 2019 08:47
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D3 two-valued heatmap
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index.html
<!-- Code from d3-graph-gallery.com -->
<!DOCTYPE html>
<meta charset="utf-8">
<!-- Load d3.js -->
<script src="http://d3js.org/d3.v4.js"></script>
<!-- Create a div where the graph will take place -->
<div id="my_dataviz"></div>
<script>
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"interactor1": "Q9NUP1",
"interactor2": "Q96EV8",
"interactor1_experiment": 5,
"interactor2_experiment": 8,
"distance": 0.247562113418027,
"correlation": null
},
{
"interactor1": "Q9NUP1",
"interactor2": "Q96EV8",
"interactor1_experiment": 8,
"interactor2_experiment": 6,
"distance": 0.265941722939444,
"correlation": null
},
{
"interactor1": "Q9NUP1",
"interactor2": "Q96EV8",
"interactor1_experiment": 6,
"interactor2_experiment": 6,
"distance": 0.0753591401224828,
"correlation": null
},
{
"interactor1": "Q9NUP1",
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"distance": 0.262232721070426,
"correlation": null
},
{
"interactor1": "Q9NUP1",
"interactor2": "Q96EV8",
"interactor1_experiment": 4,
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"distance": 0.766161210190127,
"correlation": null
},
{
"interactor1": "Q9NUP1",
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},
{
"interactor1": "Q9NUP1",
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"distance": 0.598852235530602,
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},
{
"interactor1": "Q9NUP1",
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"distance": 0.598852235530602,
"correlation": null
},
{
"interactor1": "Q9NUP1",
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"distance": 0.367794779734569,
"correlation": null
},
{
"interactor1": "Q9NUP1",
"interactor2": "Q9NUP1",
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"distance": 0.239858291497292,
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},
{
"interactor1": "Q9NUP1",
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"distance": 0,
"correlation": null
},
{
"interactor1": "Q9NUP1",
"interactor2": "Q9NUP1",
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"distance": 0.367794779734569,
"correlation": null
},
{
"interactor1": "Q9NUP1",
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"correlation": null
},
{
"interactor1": "Q9NUP1",
"interactor2": "Q9NUP1",
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},
{
"interactor1": "Q9NUP1",
"interactor2": "Q9NUP1",
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"distance": 0.775569468197401,
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},
{
"interactor1": "Q9NUP1",
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"distance": 0,
"correlation": null
},
{
"interactor1": "Q9NUP1",
"interactor2": "Q9NUP1",
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"distance": 0.892116023844433,
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},
{
"interactor1": "Q9NUP1",
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},
{
"interactor1": "Q9NUP1",
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},
{
"interactor1": "Q9NUP1",
"interactor2": "Q9NUP1",
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},
{
"interactor1": "Q9NUP1",
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"interactor1_experiment": 8,
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}
];
// set the dimensions and margins of the graph
var margin = {top: 0, right: 0, bottom: 0, left: 0};
var width = 500 - margin.left - margin.right;
var height = 500 - margin.top - margin.bottom;
// Makes transactions smooth
var timeoutFunction = null;
// append the svg object to the body of the page
var svg = d3.select("#my_dataviz")
.append("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform",
"translate(" + margin.left + "," + margin.top + ")");
// Labels of row and columns
var indexes = new Set([... data.map(e => e.interactor1+"-"+(e.interactor1_experiment)), ...data.map(e => e.interactor2+"-"+e.interactor2_experiment)]);
var myGroups = [... indexes];
var myVars = [... indexes];
// Build X scales and axis:
var x = d3.scaleBand()
.range([ 0, width ])
.domain(myGroups.reverse())
.padding(0.03);
// Uncomment the following to append axes
// svg.append("g")
// .attr("transform", "translate(0," + height + ")")
// .call(d3.axisBottom(x));
// Build X scales and axis:
var y = d3.scaleBand()
.range([ height, 0 ])
.domain(myVars)
.padding(0.03);
// Uncomment the following to append axes
// svg.append("g")
// .call(d3.axisLeft(y));
// Build color scale
var blue = d3.scaleLinear()
.range(["white", "#3b8ab3"])
.domain([Math.max.apply(Math, data.map(e => e.distance)), Math.min.apply(Math, data.map(e => e.distance))]);
var orange = d3.scaleLinear()
.range(["white", "#b3813d"])
.domain([Math.min.apply(Math, data.map(e => e.correlation)), Math.max.apply(Math, data.map(e => e.correlation))]);
// create a tooltip
var tooltip = d3.select("#my_dataviz")
.append("div")
.style("opacity", 0)
.attr("class", "tooltip")
.style("background-color", "#fbfbfb")
.style("border", "solid")
.style("position", "absolute")
.style("border-width", 0)
.style("border-radius", "2px")
.style("padding", "5px");
var mouseover = function(d) {
// select opposite of d
d3.select(this)
.style("stroke", "black");
d3.select("#" + d.interactor2 + "" + d.interactor2_experiment + "" + d.interactor1 + "" + d.interactor1_experiment)
.style("stroke", "black");
tooltip
.style("opacity", 1);
};
var mousemove = function(d) {
clearTimeout(timeoutFunction);
tooltip
.html(
"Protein " + d.interactor1 + " in experiment " + d.interactor1_experiment + "<br\>" +
"Protein " + d.interactor2 + " in experiment " + d.interactor2_experiment + "<br\>" +
"Euc. distance: " + d.distance.toFixed(2) + "<br\>" +
"HIPPIE score: " + d.correlation)
.style("left", (d3.mouse(this)[0]+70) + "px")
.style("top", (d3.mouse(this)[1]) + "px")
};
var mouseleave = function(d) {
d3.select(this)
.style("stroke", "none");
d3.select("#" + d.interactor2 + "" + d.interactor2_experiment + "" + d.interactor1 + "" + d.interactor1_experiment)
.style("stroke", "none");
timeoutFunction = setTimeout(() => {
tooltip
.style("opacity", 0);
}, 100 )
};
svg.selectAll()
.data(data)
.enter()
.append("rect")
.attr("id", (d) => d.interactor1 + "" + d.interactor1_experiment + "" + d.interactor2 + "" + d.interactor2_experiment)
.attr("x", function(d) {return x(d.interactor1 + "-" + d.interactor1_experiment)})
.attr("y", function(d) {return y(d.interactor2 + "-" + d.interactor2_experiment)})
.attr("width", x.bandwidth() )
.attr("height", y.bandwidth() )
.style("fill", function(d) {
// Diagonal
if(d.interactor1 + "-" + d.interactor1_experiment === d.interactor2 + "-" + d.interactor2_experiment){
return orange(d.correlation);
//Right off-diagonal
} else if(x(d.interactor1 + "-" + d.interactor1_experiment) > y(d.interactor2 + "-" + d.interactor2_experiment)){
return blue(d.distance);
// Left off-diagonal
} else {
return orange(d.correlation);
}
}
)
.style("stroke-width", 2)
.on("mouseover", mouseover)
.on("mousemove", mousemove)
.on("mouseleave", mouseleave);
</script>
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