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rhngla/GO_terms.csv

Last active August 8, 2023 17:50
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Pathways and Genes
Raw
GO_terms.csv
GO_id description
GO:0006623 protein targeting to vacuole
GO:0006626 protein targeting to mitochondrion
GO:0006627 protein processing involved in protein targeting to mitochondrion
GO:0006672 ceramide metabolic process
GO:0031647 regulation of protein stability
GO:0006744 ubiquinone biosynthetic process
GO:0006734 NADH metabolic process
GO:0006783 heme biosynthetic process
GO:0006506 GPI anchor biosynthetic process
GO:0006563 L-serine metabolic process
GO:0006552 leucine catabolic process
GO:0031442 positive regulation of mRNA 3'-end processing
GO:0016925 protein sumoylation
GO:0002098 tRNA wobble uridine modification
GO:0016192 vesicle-mediated transport
GO:0090141 positive regulation of mitochondrial fission
GO:0006974 DNA damage response
GO:0043928 exonucleolytic catabolism of deadenylated mRNA
GO:0090207 regulation of triglyceride metabolic process
GO:0016070 RNA metabolic process
GO:0006400 tRNA modification
GO:0006418 tRNA aminoacylation for protein translation
GO:0006488 dolichol-linked oligosaccharide biosynthetic process
GO:0006489 dolichyl diphosphate biosynthetic process
GO:0006479 protein methylation
GO:0006384 transcription initiation at RNA polymerase III promoter
GO:0070987 error-free translesion synthesis
GO:0006390 mitochondrial transcription
GO:0070979 protein K11-linked ubiquitination
GO:0070940 obsolete dephosphorylation of RNA polymerase II C-terminal domain
GO:0070936 protein K48-linked ubiquitination
GO:0051457 maintenance of protein location in nucleus
GO:0051560 mitochondrial calcium ion homeostasis
GO:0051568 histone H3-K4 methylation
GO:0038061 non-canonical NF-kappaB signal transduction
GO:0002143 tRNA wobble position uridine thiolation
GO:0051123 RNA polymerase II preinitiation complex assembly
GO:0051131 chaperone-mediated protein complex assembly
GO:0051096 positive regulation of helicase activity
GO:0051084 'de novo' post-translational protein folding
GO:0051085 chaperone cofactor-dependent protein refolding
GO:0051683 establishment of Golgi localization
GO:0061025 membrane fusion
GO:0001731 formation of translation preinitiation complex
GO:2000210 positive regulation of anoikis
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:0006904 vesicle docking involved in exocytosis
GO:0006907 pinocytosis
GO:0002223 stimulatory C-type lectin receptor signaling pathway
GO:0002218 activation of innate immune response
GO:0051223 regulation of protein transport
GO:0051170 import into nucleus
GO:0075713 establishment of integrated proviral latency
GO:0002756 MyD88-independent toll-like receptor signaling pathway
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0031167 rRNA methylation
GO:0006325 chromatin organization
GO:0045948 positive regulation of translational initiation
GO:0006301 postreplication repair
GO:0070901 mitochondrial tRNA methylation
GO:0006363 termination of RNA polymerase I transcription
GO:0006370 7-methylguanosine mRNA capping
GO:0018344 protein geranylgeranylation
GO:0006352 DNA-templated transcription initiation
GO:0006281 DNA repair
GO:0006284 base-excision repair
GO:0006282 regulation of DNA repair
GO:0006295 obsolete nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 obsolete nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006293 nucleotide-excision repair, preincision complex stabilization
GO:0006294 nucleotide-excision repair, preincision complex assembly
GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0006278 RNA-templated DNA biosynthetic process
GO:0016559 peroxisome fission
GO:0016584 obsolete nucleosome positioning
GO:0006851 mitochondrial calcium ion transmembrane transport
GO:0016254 preassembly of GPI anchor in ER membrane
GO:0016240 autophagosome membrane docking
GO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
GO:0045116 protein neddylation
GO:0045292 mRNA cis splicing, via spliceosome
GO:1901799 negative regulation of proteasomal protein catabolic process
GO:0060071 Wnt signaling pathway, planar cell polarity pathway
GO:0035511 obsolete oxidative DNA demethylation
GO:0035542 regulation of SNARE complex assembly
GO:0045047 protein targeting to ER
GO:0045054 constitutive secretory pathway
GO:0006226 dUMP biosynthetic process
GO:0045727 positive regulation of translation
GO:0072318 clathrin coat disassembly
GO:0072384 organelle transport along microtubule
GO:0035333 Notch receptor processing, ligand-dependent
GO:0001510 RNA methylation
GO:0001522 pseudouridine synthesis
GO:1903543 positive regulation of exosomal secretion
GO:1903508 obsolete positive regulation of nucleic acid-templated transcription
GO:0001832 blastocyst growth
GO:0050852 T cell receptor signaling pathway
GO:0070129 regulation of mitochondrial translation
GO:0070131 positive regulation of mitochondrial translation
GO:0060765 regulation of androgen receptor signaling pathway
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly
GO:0008033 tRNA processing
GO:0045008 depyrimidination
GO:0035666 TRIF-dependent toll-like receptor signaling pathway
GO:0072334 UDP-galactose transmembrane transport
GO:0030150 protein import into mitochondrial matrix
GO:0032781 positive regulation of ATP-dependent activity
GO:0042176 regulation of protein catabolic process
GO:0042776 proton motive force-driven mitochondrial ATP synthesis
GO:0042769 obsolete DNA damage response, detection of DNA damage
GO:0035965 cardiolipin acyl-chain remodeling
GO:0008535 respiratory chain complex IV assembly
GO:0042987 amyloid precursor protein catabolic process
GO:0003400 regulation of COPII vesicle coating
GO:1904263 positive regulation of TORC1 signaling
GO:1990182 exosomal secretion
GO:0070584 mitochondrion morphogenesis
GO:0070537 histone H2A K63-linked deubiquitination
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
GO:0006105 succinate metabolic process
GO:0030576 Cajal body organization
GO:0042273 ribosomal large subunit biogenesis
GO:0042276 error-prone translesion synthesis
GO:0042407 cristae formation
GO:0018022 peptidyl-lysine methylation
GO:0006090 pyruvate metabolic process
GO:0033683 obsolete nucleotide-excision repair, DNA incision
GO:0043085 positive regulation of catalytic activity
GO:1904380 endoplasmic reticulum mannose trimming
GO:2000767 positive regulation of cytoplasmic translation
GO:0048490 anterograde synaptic vesicle transport
GO:0061408 positive regulation of transcription from RNA polymerase II promoter in response to heat stress
GO:1902527 positive regulation of protein monoubiquitination
GO:0050434 positive regulation of viral transcription
GO:1902036 regulation of hematopoietic stem cell differentiation
GO:2001268 negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
GO:0097680 double-strand break repair via classical nonhomologous end joining
GO:0061635 regulation of protein complex stability
GO:0009083 branched-chain amino acid catabolic process
GO:0001188 RNA polymerase I preinitiation complex assembly
GO:0048227 plasma membrane to endosome transport
GO:0034198 cellular response to amino acid starvation
GO:1900060 negative regulation of ceramide biosynthetic process
GO:0000717 nucleotide-excision repair, DNA duplex unwinding
GO:0009298 GDP-mannose biosynthetic process
GO:0034244 negative regulation of transcription elongation by RNA polymerase II
GO:0071360 cellular response to exogenous dsRNA
GO:0010390 histone monoubiquitination
GO:0000387 spliceosomal snRNP assembly
GO:1900364 negative regulation of mRNA polyadenylation
GO:0048820 hair follicle maturation
GO:1902902 negative regulation of autophagosome assembly
GO:0009235 cobalamin metabolic process
GO:0034227 tRNA thio-modification
GO:1904851 positive regulation of establishment of protein localization to telomere
GO:1904874 positive regulation of telomerase RNA localization to Cajal body
GO:0051973 positive regulation of telomerase activity
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000460 maturation of 5.8S rRNA
GO:0000470 maturation of LSU-rRNA
GO:0036444 calcium import into the mitochondrion
GO:0000492 box C/D snoRNP assembly
GO:0007021 tubulin complex assembly
GO:0034605 cellular response to heat
GO:0007007 inner mitochondrial membrane organization
GO:0007005 mitochondrion organization
GO:0007032 endosome organization
GO:0007033 vacuole organization
GO:0007031 peroxisome organization
GO:0019086 late viral transcription
GO:0032049 cardiolipin biosynthetic process
GO:0019068 virion assembly
GO:0019058 viral life cycle
GO:0009838 abscission
GO:0010821 regulation of mitochondrion organization
GO:0007220 Notch receptor processing
GO:0010835 regulation of protein ADP-ribosylation
GO:0046755 viral budding
GO:0071712 ER-associated misfolded protein catabolic process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process
GO:0010498 proteasomal protein catabolic process
GO:0034551 mitochondrial respiratory chain complex III assembly
GO:0034599 cellular response to oxidative stress
GO:0032527 protein exit from endoplasmic reticulum
GO:0032509 endosome transport via multivesicular body sorting pathway
GO:0032447 protein urmylation
GO:0032446 protein modification by small protein conjugation
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0022904 respiratory electron transport chain
GO:0071816 tail-anchored membrane protein insertion into ER membrane
GO:0007253 cytoplasmic sequestering of NF-kappaB
GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway
GO:0044281 small molecule metabolic process
GO:0019430 removal of superoxide radicals
GO:0034982 mitochondrial protein processing
GO:0019348 dolichol metabolic process
GO:0071902 positive regulation of protein serine/threonine kinase activity
GO:0065003 protein-containing complex assembly
GO:0032727 positive regulation of interferon-alpha production
GO:0036211 protein modification process
Raw
KEGG_gene_info.csv
pathway_id gene desc
mmu00190 Cox5a Oxidative phosphorylation
mmu01100 Cox5a Metabolic pathways
mmu04260 Cox5a Cardiac muscle contraction
mmu04714 Cox5a Thermogenesis
mmu04932 Cox5a Non-alcoholic fatty liver disease
mmu05010 Cox5a Alzheimer disease
mmu05012 Cox5a Parkinson disease
mmu05014 Cox5a Amyotrophic lateral sclerosis
mmu05016 Cox5a Huntington disease
mmu05020 Cox5a Prion disease
mmu05022 Cox5a Pathways of neurodegeneration - multiple diseases
mmu05208 Cox5a Chemical carcinogenesis - reactive oxygen species
mmu05415 Cox5a Diabetic cardiomyopathy
mmu00190 Cox8a Oxidative phosphorylation
mmu01100 Cox8a Metabolic pathways
mmu04260 Cox8a Cardiac muscle contraction
mmu04714 Cox8a Thermogenesis
mmu04932 Cox8a Non-alcoholic fatty liver disease
mmu05010 Cox8a Alzheimer disease
mmu05012 Cox8a Parkinson disease
mmu05014 Cox8a Amyotrophic lateral sclerosis
mmu05016 Cox8a Huntington disease
mmu05020 Cox8a Prion disease
mmu05022 Cox8a Pathways of neurodegeneration - multiple diseases
mmu05208 Cox8a Chemical carcinogenesis - reactive oxygen species
mmu05415 Cox8a Diabetic cardiomyopathy
mmu00190 Cox6c Oxidative phosphorylation
mmu01100 Cox6c Metabolic pathways
mmu04260 Cox6c Cardiac muscle contraction
mmu04714 Cox6c Thermogenesis
mmu04932 Cox6c Non-alcoholic fatty liver disease
mmu05010 Cox6c Alzheimer disease
mmu05012 Cox6c Parkinson disease
mmu05014 Cox6c Amyotrophic lateral sclerosis
mmu05016 Cox6c Huntington disease
mmu05020 Cox6c Prion disease
mmu05022 Cox6c Pathways of neurodegeneration - multiple diseases
mmu05208 Cox6c Chemical carcinogenesis - reactive oxygen species
mmu05415 Cox6c Diabetic cardiomyopathy
mmu00190 Cox7b Oxidative phosphorylation
mmu01100 Cox7b Metabolic pathways
mmu04260 Cox7b Cardiac muscle contraction
mmu04714 Cox7b Thermogenesis
mmu04932 Cox7b Non-alcoholic fatty liver disease
mmu05010 Cox7b Alzheimer disease
mmu05012 Cox7b Parkinson disease
mmu05014 Cox7b Amyotrophic lateral sclerosis
mmu05016 Cox7b Huntington disease
mmu05020 Cox7b Prion disease
mmu05022 Cox7b Pathways of neurodegeneration - multiple diseases
mmu05208 Cox7b Chemical carcinogenesis - reactive oxygen species
mmu05415 Cox7b Diabetic cardiomyopathy
mmu00190 Cox7a2 Oxidative phosphorylation
mmu01100 Cox7a2 Metabolic pathways
mmu04260 Cox7a2 Cardiac muscle contraction
mmu04714 Cox7a2 Thermogenesis
mmu04932 Cox7a2 Non-alcoholic fatty liver disease
mmu05010 Cox7a2 Alzheimer disease
mmu05012 Cox7a2 Parkinson disease
mmu05014 Cox7a2 Amyotrophic lateral sclerosis
mmu05016 Cox7a2 Huntington disease
mmu05020 Cox7a2 Prion disease
mmu05022 Cox7a2 Pathways of neurodegeneration - multiple diseases
mmu05208 Cox7a2 Chemical carcinogenesis - reactive oxygen species
mmu05415 Cox7a2 Diabetic cardiomyopathy
mmu00190 Cox6a1 Oxidative phosphorylation
mmu01100 Cox6a1 Metabolic pathways
mmu04260 Cox6a1 Cardiac muscle contraction
mmu04714 Cox6a1 Thermogenesis
mmu04932 Cox6a1 Non-alcoholic fatty liver disease
mmu05010 Cox6a1 Alzheimer disease
mmu05012 Cox6a1 Parkinson disease
mmu05014 Cox6a1 Amyotrophic lateral sclerosis
mmu05016 Cox6a1 Huntington disease
mmu05020 Cox6a1 Prion disease
mmu05022 Cox6a1 Pathways of neurodegeneration - multiple diseases
mmu05208 Cox6a1 Chemical carcinogenesis - reactive oxygen species
mmu05415 Cox6a1 Diabetic cardiomyopathy
mmu00190 Cox5b Oxidative phosphorylation
mmu01100 Cox5b Metabolic pathways
mmu04260 Cox5b Cardiac muscle contraction
mmu04714 Cox5b Thermogenesis
mmu04932 Cox5b Non-alcoholic fatty liver disease
mmu05010 Cox5b Alzheimer disease
mmu05012 Cox5b Parkinson disease
mmu05014 Cox5b Amyotrophic lateral sclerosis
mmu05016 Cox5b Huntington disease
mmu05020 Cox5b Prion disease
mmu05022 Cox5b Pathways of neurodegeneration - multiple diseases
mmu05208 Cox5b Chemical carcinogenesis - reactive oxygen species
mmu05415 Cox5b Diabetic cardiomyopathy
mmu04714 Cox14 Thermogenesis
mmu00190 Cox7c Oxidative phosphorylation
mmu01100 Cox7c Metabolic pathways
mmu04260 Cox7c Cardiac muscle contraction
mmu04714 Cox7c Thermogenesis
mmu04932 Cox7c Non-alcoholic fatty liver disease
mmu05010 Cox7c Alzheimer disease
mmu05012 Cox7c Parkinson disease
mmu05014 Cox7c Amyotrophic lateral sclerosis
mmu05016 Cox7c Huntington disease
mmu05020 Cox7c Prion disease
mmu05022 Cox7c Pathways of neurodegeneration - multiple diseases
mmu05208 Cox7c Chemical carcinogenesis - reactive oxygen species
mmu05415 Cox7c Diabetic cardiomyopathy
mmu00190 Cox17 Oxidative phosphorylation
mmu01100 Cox17 Metabolic pathways
mmu04714 Cox17 Thermogenesis
mmu04310 Ctbp1 Wnt signaling pathway
mmu04330 Ctbp1 Notch signaling pathway
mmu05200 Ctbp1 Pathways in cancer
mmu05220 Ctbp1 Chronic myeloid leukemia
mmu04310 Ctbp1 Wnt signaling pathway
mmu04330 Ctbp1 Notch signaling pathway
mmu05200 Ctbp1 Pathways in cancer
mmu05220 Ctbp1 Chronic myeloid leukemia
mmu04310 Ctbp1 Wnt signaling pathway
mmu04330 Ctbp1 Notch signaling pathway
mmu05200 Ctbp1 Pathways in cancer
mmu05220 Ctbp1 Chronic myeloid leukemia
mmu04310 Ctbp1 Wnt signaling pathway
mmu04330 Ctbp1 Notch signaling pathway
mmu05200 Ctbp1 Pathways in cancer
mmu05220 Ctbp1 Chronic myeloid leukemia
mmu03022 Ccnh Basal transcription factors
mmu03420 Ccnh Nucleotide excision repair
mmu04110 Ccnh Cell cycle
mmu04068 Ccnd2 FoxO signaling pathway
mmu04110 Ccnd2 Cell cycle
mmu04115 Ccnd2 p53 signaling pathway
mmu04151 Ccnd2 PI3K-Akt signaling pathway
mmu04218 Ccnd2 Cellular senescence
mmu04310 Ccnd2 Wnt signaling pathway
mmu04340 Ccnd2 Hedgehog signaling pathway
mmu04390 Ccnd2 Hippo signaling pathway
mmu04510 Ccnd2 Focal adhesion
mmu04630 Ccnd2 JAK-STAT signaling pathway
mmu04917 Ccnd2 Prolactin signaling pathway
mmu05162 Ccnd2 Measles
mmu05165 Ccnd2 Human papillomavirus infection
mmu05166 Ccnd2 Human T-cell leukemia virus 1 infection
mmu05169 Ccnd2 Epstein-Barr virus infection
mmu05200 Ccnd2 Pathways in cancer
mmu05202 Ccnd2 Transcriptional misregulation in cancer
mmu05203 Ccnd2 Viral carcinogenesis
mmu05206 Ccnd2 MicroRNAs in cancer
mmu04144 Rab11a Endocytosis
mmu04961 Rab11a Endocrine and other factor-regulated calcium reabsorption
mmu04962 Rab11a Vasopressin-regulated water reabsorption
mmu04972 Rab11a Pancreatic secretion
mmu05164 Rab11a Influenza A
mmu04144 Rab11b Endocytosis
mmu04152 Rab11b AMPK signaling pathway
mmu04962 Rab11b Vasopressin-regulated water reabsorption
mmu05164 Rab11b Influenza A
mmu05134 Rab1b Legionellosis
mmu04110 Rad21 Cell cycle
mmu04110 Rad21 Cell cycle
mmu04110 Rad21 Cell cycle
mmu00983 mKIAA4033 Drug metabolism - other enzymes
mmu04145 mKIAA4033 Phagosome
mmu04613 mKIAA4033 Neutrophil extracellular trap formation
mmu05202 mKIAA4033 Transcriptional misregulation in cancer
mmu05221 mKIAA4033 Acute myeloid leukemia
mmu05133 Irf8 Pertussis
mmu05133 Irf8 Pertussis
mmu05133 Irf8 Pertussis
mmu00250 Gad1 Alanine, aspartate and glutamate metabolism
mmu00410 Gad1 beta-Alanine metabolism
mmu00430 Gad1 Taurine and hypotaurine metabolism
mmu00650 Gad1 Butanoate metabolism
mmu01100 Gad1 Metabolic pathways
mmu04727 Gad1 GABAergic synapse
mmu04940 Gad1 Type I diabetes mellitus
mmu00250 Gad2 Alanine, aspartate and glutamate metabolism
mmu00410 Gad2 beta-Alanine metabolism
mmu00430 Gad2 Taurine and hypotaurine metabolism
mmu00650 Gad2 Butanoate metabolism
mmu01100 Gad2 Metabolic pathways
mmu04727 Gad2 GABAergic synapse
mmu04940 Gad2 Type I diabetes mellitus
mmu00250 Gad2 Alanine, aspartate and glutamate metabolism
mmu00410 Gad2 beta-Alanine metabolism
mmu00430 Gad2 Taurine and hypotaurine metabolism
mmu00650 Gad2 Butanoate metabolism
mmu01100 Gad2 Metabolic pathways
mmu04727 Gad2 GABAergic synapse
mmu04940 Gad2 Type I diabetes mellitus
mmu04024 Crhr2 cAMP signaling pathway
mmu04080 Crhr2 Neuroactive ligand-receptor interaction
mmu04934 Crhr2 Cushing syndrome
mmu04730 Gnaz Long-term depression
mmu04730 Gnaz Long-term depression
mmu04010 Ngf MAPK signaling pathway
mmu04014 Ngf Ras signaling pathway
mmu04015 Ngf Rap1 signaling pathway
mmu04020 Ngf Calcium signaling pathway
mmu04060 Ngf Cytokine-cytokine receptor interaction
mmu04151 Ngf PI3K-Akt signaling pathway
mmu04210 Ngf Apoptosis
mmu04722 Ngf Neurotrophin signaling pathway
mmu04750 Ngf Inflammatory mediator regulation of TRP channels
mmu04010 Ngf MAPK signaling pathway
mmu04014 Ngf Ras signaling pathway
mmu04015 Ngf Rap1 signaling pathway
mmu04020 Ngf Calcium signaling pathway
mmu04060 Ngf Cytokine-cytokine receptor interaction
mmu04151 Ngf PI3K-Akt signaling pathway
mmu04210 Ngf Apoptosis
mmu04722 Ngf Neurotrophin signaling pathway
mmu04750 Ngf Inflammatory mediator regulation of TRP channels
mmu04010 Ngf MAPK signaling pathway
mmu04014 Ngf Ras signaling pathway
mmu04015 Ngf Rap1 signaling pathway
mmu04020 Ngf Calcium signaling pathway
mmu04060 Ngf Cytokine-cytokine receptor interaction
mmu04151 Ngf PI3K-Akt signaling pathway
mmu04210 Ngf Apoptosis
mmu04722 Ngf Neurotrophin signaling pathway
mmu04750 Ngf Inflammatory mediator regulation of TRP channels
mmu04010 Ngf MAPK signaling pathway
mmu04014 Ngf Ras signaling pathway
mmu04015 Ngf Rap1 signaling pathway
mmu04020 Ngf Calcium signaling pathway
mmu04060 Ngf Cytokine-cytokine receptor interaction
mmu04151 Ngf PI3K-Akt signaling pathway
mmu04210 Ngf Apoptosis
mmu04722 Ngf Neurotrophin signaling pathway
mmu04750 Ngf Inflammatory mediator regulation of TRP channels
mmu04010 Ngf MAPK signaling pathway
mmu04014 Ngf Ras signaling pathway
mmu04015 Ngf Rap1 signaling pathway
mmu04020 Ngf Calcium signaling pathway
mmu04060 Ngf Cytokine-cytokine receptor interaction
mmu04151 Ngf PI3K-Akt signaling pathway
mmu04210 Ngf Apoptosis
mmu04722 Ngf Neurotrophin signaling pathway
mmu04750 Ngf Inflammatory mediator regulation of TRP channels
mmu04010 Ngf MAPK signaling pathway
mmu04014 Ngf Ras signaling pathway
mmu04015 Ngf Rap1 signaling pathway
mmu04020 Ngf Calcium signaling pathway
mmu04060 Ngf Cytokine-cytokine receptor interaction
mmu04151 Ngf PI3K-Akt signaling pathway
mmu04210 Ngf Apoptosis
mmu04722 Ngf Neurotrophin signaling pathway
mmu04750 Ngf Inflammatory mediator regulation of TRP channels
mmu04010 Ngf MAPK signaling pathway
mmu04014 Ngf Ras signaling pathway
mmu04015 Ngf Rap1 signaling pathway
mmu04020 Ngf Calcium signaling pathway
mmu04060 Ngf Cytokine-cytokine receptor interaction
mmu04151 Ngf PI3K-Akt signaling pathway
mmu04210 Ngf Apoptosis
mmu04722 Ngf Neurotrophin signaling pathway
mmu04750 Ngf Inflammatory mediator regulation of TRP channels
Raw
KEGG_pathway_genes.toml
[mmu04710]
pathway_name = "Circadian rhythm "
hk_genes = [ "Csnk1d", "Cry1", "Creb1", "Rbx1", "Prkab2", "Prkaa1", "Fbxl3", "Clock", "Prkag1", "Cul1",]
facs_genes = [ "Rora", "Csnk1d", "Nr1d1", "Bhlhe40", "Creb1", "Nr1d2", "Fbxw11", "Csnk1e", "Rbx1", "Btrc", "Fbxl3", "Clock", "Cry2", "Rorb", "Prkag1", "Cul1",]
ps_genes = [ "Bhlhe40", "Rorb", "Dbp", "Npas2",]
facs_ps_genes = [ "Bhlhe40", "Rorb",]
npp_genes = []
[mmu04713]
pathway_name = "Circadian entrainment "
hk_genes = [ "Gnb1", "Creb1", "Mapk1", "Camk2g", "Prkacb", "Calm1", "Gnai3", "Rps6ka5",]
facs_genes = [ "Grin1", "Gria1", "Grin2c", "Gng7", "Gucy1a2", "Kcnj3", "Gnas", "Calm2", "Itpr1", "Gnb2", "Gng5", "Nos1", "Adcy1", "Camk2a", "Kcnj9", "Camk2d", "Prkacb", "Camk2b", "Gnai3", "Gnao1", "Calm3", "Gnai2", "Mapk3", "Creb1", "Gria2", "Gnai1", "Prkcg", "Mapk1", "Prkca", "Camk2g", "Gng2", "Gng3", "Gnaq", "Gnb5", "Ryr2", "Gng11", "Gnb1", "Gng4", "Gria3", "Plcb1", "Gng10", "Gng12", "Grin2b", "Calm1", "Plcb4", "Fos", "Gnb4", "Prkcb", "Adcy2", "Gria4",]
ps_genes = [ "Gria1", "Gng7", "Cacna1h", "Grin2a", "Kcnj6", "Gng13", "Itpr1", "Nos1", "Adcy1", "Prkcg", "Gng2", "Ryr3", "Cacna1g", "Gng4", "Gng12", "Nos1ap", "Gnb4", "Adcy2", "Camk2d",]
facs_ps_genes = [ "Nos1", "Adcy1", "Gng4", "Gria1", "Camk2d", "Gng12", "Gng7", "Prkcg", "Gng2", "Gnb4", "Adcy2", "Itpr1",]
npp_genes = [ "Adcyap1", "Adcyap1r1",]
[mmu00010]
pathway_name = "Glycolysis / Gluconeogenesis "
hk_genes = [ "Aldh9a1", "Pfkp", "Minpp1", "Hk1", "Pgm1", "G6pc3", "Adh5", "Gpi1", "Tpi1",]
facs_genes = [ "Acss2", "Pgm2", "Ldhb", "Aldoc", "Hk1", "Eno2", "Tpi1", "Adh5", "Ldha", "Akr1a1", "Bpgm", "Acss1", "Minpp1", "Pgk1", "Gpi1", "Aldh2", "Pfkm", "Pdhb", "Aldh7a1", "Dlat", "Aldh3a2", "Dld", "Gapdh", "Aldh9a1", "Pfkp", "Pfkl", "Pdha1", "Pgam1", "Pkm", "Eno1", "Aldoa",]
ps_genes = []
facs_ps_genes = []
npp_genes = []
[mmu00620]
pathway_name = "Pyruvate metabolism "
hk_genes = [ "Aldh9a1", "Me2", "Adh5", "Mdh1",]
facs_genes = [ "Acss2", "Hagh", "Ldhb", "Glo1", "Adh5", "Me3", "Ldha", "Akr1a1", "Acss1", "Acat1", "Aldh2", "Pdhb", "Aldh7a1", "Fh1", "Dlat", "Aldh3a2", "Dld", "Aldh9a1", "Mdh2", "Pdha1", "Mdh1", "Pkm",]
ps_genes = []
facs_ps_genes = []
npp_genes = []
[mmu00190]
pathway_name = "Oxidative phosphorylation "
hk_genes = [ "Cox17", "Ppa2", "Atp6v1d", "Atp6v1h", "Atp6v0e", "Ndufb8", "Cox11", "Cox15",]
facs_genes = [ "Ndufa9", "Ndufa8", "Uqcrh", "Ndufv3", "Atp6v0d1", "Atp6v1c1", "Ndufa10", "ND4", "Atp6v1d", "Ndufs6", "Cox7b", "Atp6v1g2", "Atp6v1f", "Ndufs3", "Uqcr10", "Cox6a1", "Sdhd", "Ndufc1", "Cox8a", "Ndufs4", "Atp6ap1", "Atp6v0b", "Ndufab1", "Cyc1", "Ndufs8", "Ndufa11", "Cox4i1", "Ndufb2", "ND6", "Ndufa1", "Ndufc2", "Uqcrfs1", "Ndufb5", "Cox6a2", "Atp6v1h", "Ndufb8", "Ndufs5", "Ndufb10", "Uqcrc2", "Ndufa13", "Atp6v1b2", "CYTB", "Atp6v1a", "Ndufa5", "Sdha", "Sdhc", "Ndufv1", "ND2", "Ndufb6", "Ndufb7", "Atp6v0e", "ND5", "Cox6c", "Uqcrq", "Cox5b", "Ndufa4", "ND1", "Ndufb11", "Ndufb3", "Cycs", "Atp6v0e2", "Uqcr11", "COX1", "Cox7a2l", "Ndufa3", "Ndufa6", "Ndufa7", "Ndufs2", "Cox7a2", "Ndufs1", "Sdhb", "Ppa1", "Ndufa2", "Atp6v0c", "Cox5a", "Atp6v1e1", "Ndufv2", "Cox17", "Ndufs7", "Uqcrc1", "Atp6v0a1", "Ppa2", "Atp6v1g1", "Ndufa12", "Uqcrb", "Cox6b1", "Ndufb9", "Cox7c",]
ps_genes = []
facs_ps_genes = []
npp_genes = []
[mmu03008]
pathway_name = "Ribosome biogenesis in eukaryotes "
hk_genes = [ "Nxt1", "Emg1", "Imp4", "Rpp38", "Eif6", "Gnl2", "Nop56", "Riok1", "Wdr36", "Mphosph10", "Csnk2a1", "Csnk2b", "Xrn2", "Utp14a", "Gnl3", "Utp15", "Utp6", "Rpp30", "Pop7", "Utp18", "Fbl", "Fcf1", "Nxf1", "Rexo2", "Heatr1", "Sbds", "Pwp2", "Rbm28", "Rrp7a", "Wdr43", "Nvl", "Csnk2a2", "Ran", "Drosha", "Nob1", "Nol6", "Tcof1", "Nat10", "Nmd3",]
facs_genes = [ "Xpo1", "Imp3", "Gnl2", "Eif6", "Nop56", "Rpp25", "Nop10", "Nxt2", "Gtpbp4", "Csnk2b", "Xrn2", "Gnl3", "Xrn1", "Mdn1", "Rpp30", "Nxf1", "Rexo2", "Sbds", "Gnl3l", "Rbm28", "Nop58", "Nvl", "Ran", "Pop5", "Nmd3",]
ps_genes = [ "Rpp25",]
facs_ps_genes = [ "Rpp25",]
npp_genes = []
[mmu03010]
pathway_name = "Ribosome "
hk_genes = [ "Mrpl14", "Mrps17", "Rpl32", "Mrpl30", "Mrpl10", "Mrpl35", "Mrpl18", "Mrpl24", "Mrps14", "Mrpl19", "Mrps9", "Mrpl9", "Mrpl13", "Mrpl22", "Rpl22", "Mrps15", "Rpl4", "Mrpl17", "Rpl35a", "Mrpl27", "Mrpl11", "Mrpl4", "Mrpl28", "Rsl24d1", "Mrps2", "Mrps16", "Mrps10", "Mrps5", "Rpl15", "Mrpl36",]
facs_genes = [ "Rps19", "Rpl18", "Mrps17", "Rpl32", "Rps21", "Mrpl20", "Mrpl30", "Mrps7", "Rpl10", "Mrpl10", "Rpl18a", "Rpl14", "Mrps18a", "Rplp0", "Rps25", "Rps4x", "Mrpl35", "Rps24", "Rpl38", "Mrpl18", "Mrps6", "Rpl7", "Mrps14", "Rps27a", "Rpl23", "Rps8", "Rpl41", "Mrpl9", "Rpl22l1", "Mrpl13", "Mrpl32", "Rps5", "Rps27l", "Mrps18c", "Rpl13", "Rpl21", "Rpl37", "Fau", "Rps15a", "Mrpl17", "Rps9", "Rpl8", "Mrpl36", "Rpl4", "Mrpl27", "Rpl19", "Mrpl11", "Rps18", "Mrpl4", "Rplp1", "Rps27", "Mrpl28", "Rpl3", "Rpl26", "Mrpl33", "Rps3a1", "Rpl13a", "Rpl37a", "Mrps12", "Mrpl3", "Rps15", "Rpl34", "Rpl9", "Rps3", "Rpl15", "Rps13", "Rps11", "Rplp2", "Mrpl15", "Rps23", "Rps2", "Rps29", "Rps14",]
ps_genes = []
facs_ps_genes = []
npp_genes = []
[mmu04310]
pathway_name = "Wnt signaling pathway "
hk_genes = [ "Ppp3r1", "Csnk1a1", "Cby1", "Crebbp", "Smad4", "Senp2", "Ctnnb1", "Nlk", "Ruvbl1", "Cacybp", "Ppp3cb", "Csnk2a1", "Gsk3b", "Csnk2b", "Ep300", "Prkacb", "Znrf3", "Tle4", "Invs", "Mapk9", "Tbl1xr1", "Rbx1", "Camk2g", "Ppp3ca", "Lrp6", "Cul1", "Ctbp1", "Csnk2a2", "Tbl1x", "Nfatc3", "Psen1", "Axin1", "Mapk8", "Rac1",]
facs_genes = [ "Ppp3r1", "Csnk1a1", "Crebbp", "Fbxw11", "Senp2", "Apc", "Ctnnb1", "Sox17", "Tle1", "Nlk", "Fzd3", "Daam2", "Tle2", "Camk2a", "Cacybp", "Nkd1", "Camk2d", "Ppp3cb", "Cxxc4", "Prickle1", "Gsk3b", "Csnk2b", "Ctnnd2", "Wnt5a", "Prkacb", "Camk2b", "Ccnd2", "Tle4", "Jun", "Mapk9", "Prkcg", "Csnk1e", "Rbx1", "Camk2g", "Prkca", "Porcn", "Ppp3ca", "Prickle2", "Dvl1", "Cul1", "Daam1", "Ccnd3", "Ctbp1", "Plcb1", "Tbl1x", "Rock2", "Psen1", "Btrc", "Plcb4", "Rhoa", "Prkcb", "Rspo1", "Mapk10", "Serpinf1", "Mapk8", "Rac1",]
ps_genes = [ "Camk2d", "Rspo3", "Cxxc4", "Sfrp2", "Wnt10a", "Prkcg", "Wnt7a", "Wnt2", "Smad3", "Rspo2", "Wnt5a", "Sfrp1", "Wnt5b", "Rspo1", "Tle1", "Wif1", "Tle4",]
facs_ps_genes = [ "Cxxc4", "Prkcg", "Wnt5a", "Camk2d", "Tle1", "Rspo1", "Tle4",]
npp_genes = []
[mmu04152]
pathway_name = "AMPK signaling pathway "
hk_genes = [ "Mtor", "Camkk2", "Insr", "Rab11b", "Prkab2", "G6pc3", "Ppp2cb", "Cpt1a", "Akt1", "Cab39l", "Rps6kb1", "Rab14", "Ppp2r3c", "Elavl1", "Mlycd", "Rab2a", "Foxo3", "Ppp2ca", "Rab10", "Rab8a", "Ppp2r5a", "Rheb", "Akt3", "Stk11", "Ppp2r1b", "Creb1", "Adipor2", "Prkaa1", "Pik3r1", "Ppp2r2a", "Ppp2r5d", "Pdpk1", "Prkag1", "Pfkp", "Cab39", "Ppp2r5c", "Ppp2r1a", "Ppp2r2d", "Tsc2", "Pik3ca", "Ppp2r5e",]
facs_genes = [ "Camkk2", "Scd2", "Creb3", "Insr", "Rab11b", "Igf1", "Cpt1c", "Ppp2cb", "Akt2", "Adipor1", "Cpt1a", "Akt1", "Rps6kb1", "Rab14", "Ppp2r2c", "Elavl1", "Rab2a", "Ppp2ca", "Rab10", "Rab8a", "Rheb", "Fasn", "Creb1", "Pfkm", "Pik3r1", "Foxo1", "Ppp2r2a", "Rps6kb2", "Ppp2r5d", "Eef2", "Pdpk1", "Prkag1", "Ppargc1a", "Pfkp", "Cab39", "Pfkl", "Ppp2r5c", "Ppp2r1a", "Ppp2r2d", "Hmgcr", "Pik3ca", "Ppp2r2b",]
ps_genes = [ "Adra1a", "Creb3l2", "Igf1", "Pfkfb3", "Foxo1", "Cidea", "Ppp2r5a",]
facs_ps_genes = [ "Igf1", "Foxo1",]
npp_genes = []
[mmu04350]
pathway_name = "TGF-beta signaling pathway "
hk_genes = [ "Smad4", "Crebbp", "Ppp2cb", "Ncor1", "Sin3a", "Rps6kb1", "E2f4", "Smad2", "Ep300", "Ppp2ca", "Smad5", "Ppp2r1b", "Smurf2", "Mapk1", "Rbx1", "Hdac1", "Cul1", "Ppp2r1a", "Sp1",]
facs_genes = [ "Emp3", "Dcn", "Crebbp", "Ppp2cb", "Id4", "Id1", "Tgfbr1", "Ncor1", "Hdac2", "Bmpr1a", "Rps6kb1", "Rgmb", "Smad2", "Ppp2ca", "Zfyve16", "Mapk3", "Mapk1", "Tfrc", "Rbx1", "Id3", "Id2", "Rps6kb2", "Cul1", "Nbl1", "Ppp2r1a", "Bmpr2", "Rock1", "Rhoa", "Trf",]
ps_genes = [ "Chrd", "Fst", "Rgma", "Tgfb3", "Skil", "Smad3", "Id2", "Nog",]
facs_ps_genes = [ "Id2",]
npp_genes = []
[mmu04010]
pathway_name = "MAPK signaling pathway "
hk_genes = [ "Sos1", "Ppp3r1", "Max", "Insr", "Pak2", "Traf6", "Chuk", "Nlk", "Map3k2", "Akt1", "Map4k4", "Nras", "Map2k1", "Cdc42", "Ppp3cb", "Hras", "Map2k5", "Mapk14", "Prkacb", "Rps6ka5", "Ikbkb", "Lamtor3", "Map2k2", "Akt3", "Taok2", "Ppp5c", "Map2k7", "Crk", "Mapk9", "Srf", "Kras", "Mapk1", "Elk1", "Ppp3ca", "Braf", "Mapk8ip3", "Crkl", "Traf2", "Map2k4", "Map3k10", "Araf", "Nfatc3", "Ppm1a", "Map3k4", "Tab1", "Tab2", "Mapk8", "Rac1",]
facs_genes = [ "Rasgrp3", "Dusp6", "Chuk", "Akt1", "Fgf9", "Irak1", "Egfr", "Erbb4", "Pak1", "Atf2", "Kras", "Ppp3ca", "Prkcb", "Fgf1", "Kdr", "Atf4", "Ikbkb", "Gadd45a", "Mras", "Rasa2", "Ppp3cb", "Tek", "Ddit3", "Taok1", "Ppp5c", "Crk", "Mapk9", "Prkcg", "Flna", "Mapt", "Mapk1", "Dusp3", "Braf", "Rasa1", "Kitl", "Gng12", "Araf", "Fgfr2", "Mapk8", "Rac1", "Lamtor3", "Ppp3r1", "Arrb1", "Igf1", "Csf1r", "Nlk", "Rasgrf2", "Kit", "Gadd45g", "Map2k1", "Cdc42", "Hras", "Jund", "Flt1", "Prkacb", "Fgfr3", "Rras", "Map4k3", "Jun", "Prkca", "Mapk8ip3", "Map2k4", "Rasgrf1", "Hspa8", "Rasgrp1", "Stmn1", "Ppm1a", "Fos", "Il1rap", "Mapk10", "Cacna2d1", "Sos1", "Insr", "Mef2c", "Bdnf", "Akt2", "Cacna2d3", "Gadd45b", "Pdgfrb", "Cacng5", "Tgfbr1", "Ptpn5", "Mapk11", "Nr4a1", "Mapk14", "Cacnb4", "Cacng3", "Map2k2", "Hspb1", "Dusp1", "Mapk3", "Igf2", "Raf1", "Ntrk2", "Cacna1e", "Rap1a", "Vegfa", "Rap1b", "Ecsit",]
ps_genes = [ "Gadd45a", "Cacna1h", "Igf1", "Map3k5", "Bdnf", "Cacna2d3", "Gadd45b", "Cacng5", "Dusp5", "Ngf", "Dusp10", "Dusp7", "Rasgrf2", "Kit", "Fgf9", "Tgfb3", "Mapk11", "Efna5", "Nr4a1", "Egfr", "Angpt1", "Nrtn", "Fgf10", "Erbb4", "Efna1", "Cacng3", "Prkcg", "Flt3", "Cacna1g", "Rasgrf1", "Cacna1e", "Gng12", "Fgf1", "Rasgrp1", "Il1rap", "Cacna2d1",]
facs_ps_genes = [ "Gadd45a", "Igf1", "Bdnf", "Gadd45b", "Cacna2d3", "Cacng5", "Rasgrf2", "Kit", "Fgf9", "Mapk11", "Nr4a1", "Egfr", "Erbb4", "Cacng3", "Prkcg", "Rasgrf1", "Cacna1e", "Gng12", "Fgf1", "Rasgrp1", "Il1rap", "Cacna2d1",]
npp_genes = []
[mmu04014]
pathway_name = "Ras signaling pathway "
hk_genes = [ "Sos1", "Bad", "Insr", "Pla2g6", "Pak2", "Rab5a", "Chuk", "Akt1", "Exoc2", "Abl1", "Nras", "Cdc42", "Map2k1", "Rab5c", "Hras", "Prkacb", "Ptpn11", "Ralbp1", "Abl2", "Map2k2", "Akt3", "Mapk9", "Tbk1", "Ksr1", "Kras", "Mapk1", "Elk1", "Pik3r1", "Gnb1", "Rala", "Brap", "Calm1", "Ikbkb", "Mapk8", "Pik3ca", "Rac1",]
facs_genes = [ "Rasgrp3", "Rab5a", "Calm2", "Chuk", "Akt1", "Gng5", "Fgf9", "Egfr", "Pak1", "Tbk1", "Kras", "Gnb1", "Rapgef5", "Rap1b", "Rasal2", "Fgf1", "Rala", "Kdr", "Rhoa", "Ikbkb", "Grin1", "Gng7", "Mras", "Rasa2", "Tek", "Ralbp1", "Calm3", "Bcl2l1", "Mapk9", "Prkcg", "Mapk1", "Pik3r1", "Rasa1", "Kitl", "Tiam1", "Gng10", "Gng12", "Fgfr2", "Mapk8", "Pik3ca", "Rac1", "Igf1", "Csf1r", "Gnb2", "Kit", "Rasgrf2", "Cdc42", "Map2k1", "Hras", "Flt1", "Prkacb", "Fgfr3", "Rras", "Prkca", "Shoc2", "Rasgrf1", "Rasgrp1", "Mapk10", "Sos1", "Rgl1", "Insr", "Bdnf", "Akt2", "Pdgfrb", "Pak3", "Map2k2", "Mapk3", "Gng2", "Gng3", "Igf2", "Gnb5", "Ralgapa1", "Gng11", "Gng4", "Raf1", "Ntrk2", "Ralgds", "Grin2b", "Rap1a", "Calm1", "Vegfa", "Gnb4", "Prkcb",]
ps_genes = [ "Gng7", "Igf1", "Grin2a", "Rasal1", "Bdnf", "Gng13", "Ngf", "Kit", "Rasgrf2", "Fgf9", "Efna5", "Egfr", "Angpt1", "Fgf10", "Efna1", "Prkcg", "Gng2", "Flt3", "Rapgef5", "Gng4", "Rasgrf1", "Rin1", "Fgf1", "Gng12", "Rasgrp1", "Gnb4",]
facs_ps_genes = [ "Kit", "Rasgrf2", "Rapgef5", "Gng4", "Fgf9", "Rasgrf1", "Fgf1", "Gng7", "Gng12", "Prkcg", "Igf1", "Gng2", "Egfr", "Rasgrp1", "Bdnf", "Gnb4",]
npp_genes = []
[mmu04020]
pathway_name = "Calcium signaling pathway "
hk_genes = [ "Stim1", "Gna11", "Ppp3r1", "Slc25a5", "Ppp3cb", "Mcu", "Mcoln1", "Camk2g", "Nfatc3", "Prkacb", "Calm1", "Ppp3ca", "Phkg2", "Vdac2", "Vdac1",]
facs_genes = [ "Grin1", "Gna11", "Ppp3r1", "Atp2b4", "Grin2c", "Slc25a5", "Itpka", "Camk4", "Ntrk3", "Grm5", "Slc8a1", "Chrm2", "Gnas", "Calm2", "Ptk2b", "Itpr1", "Pdgfrb", "Grm1", "Vdac3", "Atp2a2", "Camk2a", "Adcy1", "Nos1", "Pde1a", "Fgf9", "Ppp3cb", "Camk1", "Mcoln1", "Egfr", "Flt1", "Prkacb", "Adora2b", "Tnnc1", "Camk2b", "1810037I17Rik", "Htr2c", "Erbb4", "Fgfr3", "Calm3", "Plcd4", "Ednrb", "Gnal", "Atp2b2", "Phkg1", "Mylk", "Oxtr", "Prkcg", "Camk2g", "Prkca", "Gnaq", "Ppp3ca", "Prkcb", "Atp2b1", "Ryr2", "Vdac2", "Itpr2", "Camk1g", "Phka1", "Pln", "Plcb1", "Cacna1e", "Fgf1", "Ntrk2", "Slc25a4", "Grin3a", "Grin2b", "Calm1", "Kdr", "Fgfr2", "Vegfa", "Plcb4", "Adcy2", "Camk2d", "Adra1b", "Vdac1", "Asph",]
ps_genes = [ "Atp2b4", "Adra1a", "Camk4", "Itpka", "Cacna1h", "Orai2", "Ntrk3", "Grin2a", "Slc8a1", "Chrm2", "Itpr1", "Ptk2b", "Chrna7", "Grm1", "Ngf", "Adcy1", "Nos1", "Pde1a", "Fgf9", "Camk1", "Slc8a2", "Htr2a", "Egfr", "Chrm3", "Adrb1", "Fgf10", "Erbb4", "P2rx2", "Gnal", "Adra1d", "Ptger3", "Oxtr", "Hrh1", "Prkcg", "Ryr3", "Cacna1g", "Drd1", "Pde1b", "Sln", "Camk1g", "Cacna1e", "Fgf1", "Grin3a", "Adcy2", "Camk2d", "Adra1b", "Pde1c",]
facs_ps_genes = [ "Atp2b4", "Camk4", "Itpka", "Ntrk3", "Slc8a1", "Chrm2", "Itpr1", "Ptk2b", "Grm1", "Adcy1", "Nos1", "Pde1a", "Fgf9", "Camk1", "Egfr", "Erbb4", "Gnal", "Oxtr", "Prkcg", "Camk1g", "Cacna1e", "Fgf1", "Grin3a", "Adcy2", "Camk2d", "Adra1b",]
npp_genes = [ "Trhr2", "Grpr", "Tacr1", "Cckbr", "Tacr3", "Trhr", "Ntsr1",]
[mmu04024]
pathway_name = "cAMP signaling pathway "
hk_genes = [ "Bad", "Crebbp", "Akt1", "Map2k1", "Ep300", "Prkacb", "Gnai3", "Map2k2", "Akt3", "Atp1b3", "Creb1", "Mapk9", "Ppp1cc", "Mapk1", "Camk2g", "Pik3r1", "Braf", "Calm1", "Mapk8", "Pik3ca", "Rac1",]
facs_genes = [ "Myl9", "Grin2c", "Creb3", "Crebbp", "Chrm2", "Gnas", "Calm2", "Pde4d", "Akt1", "Ppp1r12a", "Camk2d", "Gnai3", "Atp2b2", "Pak1", "Creb1", "Gria2", "Ppp1r1b", "Ppp1cb", "Sox9", "Grin3a", "Atp1a2", "Rhoa", "Rapgef3", "Gria4", "Grin1", "Acox1", "Camk2a", "Kcnk2", "Atp1a1", "Calm3", "Mapk9", "Mapk1", "Camk2g", "Pik3r1", "Braf", "Ryr2", "Adora1", "Tiam1", "Pde10a", "Adcy2", "Mapk8", "Pik3ca", "Rac1", "Atp1a3", "Camk4", "Atp2b4", "Atp2a2", "Adcy1", "Map2k1", "Prkacb", "Rras", "Atp1b1", "Atp1b3", "Ppp1ca", "Jun", "Oxtr", "Gabbr1", "Atp2b1", "Gria3", "Pln", "Rapgef4", "Nfkbia", "Fxyd1", "Rock2", "Fos", "Mapk10", "Gria1", "Bdnf", "Akt2", "Atp1b2", "Camk2b", "Pde4b", "Map2k2", "Gnai2", "Mapk3", "Gnai1", "Raf1", "Grin2b", "Rap1a", "Calm1", "Rock1", "Rap1b",]
ps_genes = [ "Gria1", "Vav2", "Camk4", "Atp2b4", "Creb3l2", "Htr1f", "Grin2a", "Bdnf", "Chrm2", "Adcy1", "Kcnk2", "Htr1a", "Abcc4", "Adrb1", "Pde4b", "Ptger3", "Oxtr", "Ppp1r1b", "Drd1", "Adora1", "Grin3a", "Popdc3", "Adcy2", "Camk2d",]
facs_ps_genes = [ "Adcy1", "Pde4b", "Kcnk2", "Gria1", "Adora1", "Camk4", "Atp2b4", "Oxtr", "Grin3a", "Bdnf", "Ppp1r1b", "Chrm2", "Adcy2", "Camk2d",]
npp_genes = [ "Sst", "Sstr1", "Vipr2", "Crhr2", "Adcyap1", "Vip", "Crhr1", "Sstr2", "Crh", "Npy", "Adcyap1r1", "Npy1r",]
[mmu03018]
pathway_name = "RNA degradation "
hk_genes = [ "Exosc1", "Pabpc1", "Dis3", "Exosc9", "Exosc4", "C1d", "Edc4", "Cnot8", "Edc3", "Parn", "Cnot10", "Dcp1a", "Ddx6", "Xrn2", "Lsm5", "Mphosph6", "Pnpt1", "Lsm6", "Cnot1", "Zcchc7", "Exosc2", "Cnot9", "Hspd1", "Pan2", "Lsm1", "Pfkp", "Dcp2", "Patl1", "Lsm8", "Lsm4", "Exosc7", "Cnot6l",]
facs_genes = [ "Hspa9", "Exosc9", "Btg2", "C1d", "Eno2", "Lsm3", "Cnot8", "Cnot10", "Cnot2", "Btg1", "Ddx6", "Dhx36", "Xrn2", "Xrn1", "Cnot6", "Pnpt1", "Lsm6", "Pfkm", "Tob1", "Cnot4", "Cnot7", "Zcchc7", "Hspd1", "Lsm1", "Pfkp", "Pfkl", "Lsm8", "Exosc7", "Exosc10", "Eno1", "Cnot6l",]
ps_genes = []
facs_ps_genes = []
npp_genes = []
[mmu04120]
pathway_name = "Ubiquitin mediated proteolysis "
hk_genes = [ "Uba1", "Ube2j1", "Wwp2", "Cul4b", "Anapc11", "Ube3c", "Fbxo4", "Syvn1", "Ube2q1", "Pias2", "Vhl", "Ubr5", "Rchy1", "Traf6", "Ddb1", "Klhl9", "Cdc16", "Fbxw8", "Fbxw7", "Herc4", "Nedd4l", "Trip12", "Ube2w", "Pias1", "Anapc2", "Cdc34", "Ube2d2a", "Cul3", "Ppil2", "Itch", "Anapc7", "Mgrn1", "Ube2q2", "Fzr1", "Herc3", "Sae1", "Ubox5", "Ube2g1", "Smurf2", "Anapc16", "Rbx1", "Ube2l3", "Ube2k", "Stub1", "Ube2e1", "Ube2r2", "Ube2i", "Ube2n", "Cul1", "Prpf19", "Anapc5", "Ube4b", "Herc1", "Ube2f", "Cdc26", "Herc2", "Keap1", "Cdc23", "Uba2", "Trim37", "Anapc1", "Ube2z", "Ube4a", "Ube2d3",]
facs_genes = [ "Ube2ql1", "Uba1", "Xiap", "Ube2j1", "Anapc11", "Huwe1", "Fbxw11", "Pias2", "Vhl", "Ubr5", "Rchy1", "Ddb1", "Klhl9", "Ube2a", "Cdc16", "Ube2d1", "Fbxw7", "Herc4", "Ube2m", "Trip12", "Ube2w", "Pias1", "Anapc2", "Rps27a", "Cul3", "Rnf7", "Ppil2", "Itch", "Cul4a", "Cul2", "Klhl13", "Ube2b", "Mgrn1", "Ube2q2", "Fzr1", "Herc3", "Ube2e3", "Sae1", "Nedd4", "Cul5", "Ube2g1", "Ubb", "Anapc16", "Rbx1", "Ube2l3", "Ube2k", "Stub1", "Trim32", "Anapc4", "Ubc", "Ube2r2", "Ube2n", "Cul1", "Uba3", "Anapc5", "Cdc27", "Herc1", "Ube2f", "Ube2e2", "Ube3a", "Birc2", "Herc2", "Btrc", "Cdc23", "Uba2", "Trim37", "Anapc1", "Mdm2", "Birc6", "Ube2d3",]
ps_genes = []
facs_ps_genes = []
npp_genes = []
[mmu04140]
pathway_name = "Autophagy - animal "
hk_genes = [ "Mtor", "Wipi2", "Camkk2", "Bad", "Atg4b", "Atg2a", "Atg3", "Atg9a", "Mtmr14", "Pten", "Atg2b", "Ppp2cb", "Atg12", "Traf6", "Gabarapl2", "Pik3r4", "Akt1", "Rps6kb1", "Nras", "Atg16l1", "Map2k1", "Hras", "Mlst8", "Eif2ak3", "Lamp2", "Ppp2ca", "Rab7", "Prkacb", "Snap29", "Zfyve1", "Atg16l2", "Atg13", "Rab8a", "Rheb", "Mtmr3", "Hif1a", "Akt3", "Stk11", "Map2k2", "Hmgb1", "Smcr8", "Atg4d", "Atg101", "Rraga", "Mapk9", "Tbk1", "Kras", "Mapk1", "Prkaa1", "Atg5", "Pik3r1", "Ulk2", "Uvrag", "Atg4a", "Rab33b", "Stx17", "Pdpk1", "Supt20", "Eif2s1", "Atg7", "Atg14", "Tsc2", "Igbp1", "Mapk8", "Pik3ca", "Wdr41",]
facs_genes = [ "Camkk2", "Atg3", "Pten", "Mras", "Ppp2cb", "Akt2", "Becn1", "Atg12", "Lamp1", "Itpr1", "Gabarapl2", "Sh3glb1", "Akt1", "Rps6kb1", "Atg16l1", "Map2k1", "Hras", "Bnip3", "Lamp2", "Ppp2ca", "Rab7", "Ctsl", "Prkacb", "Rras", "Rab8a", "Sqstm1", "Ctsd", "Bcl2l1", "Map1lc3b", "Deptor", "Rheb", "Hif1a", "Map2k2", "Map1lc3a", "Vmp1", "Hmgb1", "Mapk3", "Rraga", "Rb1cc1", "Tbk1", "Mapk9", "Kras", "Mapk1", "Gabarap", "Trp53inp2", "Gabarapl1", "Pik3r1", "Ulk2", "Atg5", "Rps6kb2", "Bcl2", "Pdpk1", "Ctsb", "Raf1", "Eif2s1", "Supt20", "Rragb", "Tank", "Rragc", "Mapk10", "Mapk8", "Pik3ca",]
ps_genes = [ "Itpr1", "Dapk2", "Deptor",]
facs_ps_genes = [ "Deptor", "Itpr1",]
npp_genes = []
[mmu04142]
pathway_name = "Lysosome "
hk_genes = [ "Wdr7", "Smpd1", "Ap1m1", "Ap4m1", "Gga2", "Gnptg", "Dmxl1", "Ctns", "Fuca2", "Lamp2", "Mcoln1", "Ap4s1", "Ap3s2", "Ap3b1", "Ppt1", "Ap4e1", "Atp6v1h", "Gga1", "Ap1g1", "Cltc", "Arsa", "Ap3d1", "Mfsd8", "Ap3m1",]
facs_genes = [ "Laptm4a", "Ctsa", "Hexb", "Wdr7", "Ncoa7", "Neu1", "Ap1b1", "Smpd1", "Tpp1", "Cd68", "Ap1m1", "Gnptg", "Gns", "Acp2", "Dmxl1", "Gaa", "Lamp1", "Atp6v0d1", "Sort1", "Psap", "Ap3m2", "Fuca2", "Cd63", "Ap3b2", "Litaf", "Lamp2", "Mcoln1", "Atp6v0c", "Laptm5", "Ap1s2", "Ctsl", "Ap4s1", "Cltb", "Cd164", "Ap3b1", "Ctsd", "Ppt1", "Ctss", "Ap1s1", "Ctsf", "Atp6v1h", "Lgmn", "Laptm4b", "Clta", "Ids", "Fuca1", "Npc1", "Atp6v0a1", "Hgsnat", "Asah1", "Cln5", "Man2b1", "Ctsc", "Hexa", "Ctsb", "Scarb2", "Lipa", "Ctsh", "Ctsz", "Aga", "Cltc", "Atp6ap1", "Ctso", "Atp6v0b", "Ap3d1", "Npc2", "M6pr", "Ap3m1", "Dmxl2",]
ps_genes = []
facs_ps_genes = []
npp_genes = []
[mmu04721]
pathway_name = "Synaptic vesicle cycle "
hk_genes = [ "Atp6v1d", "Atp6v1h", "Atp6v0e", "Ap2b1", "Cltc", "Napa", "Ap2m1", "Nsf",]
facs_genes = [ "Dnm2", "Cplx3", "Atp6v1a", "Slc17a7", "Stx1b", "Slc6a13", "Atp6v0d1", "Snap25", "Atp6v1c1", "Ap2s1", "Atp6v1d", "Rab3a", "Syt1", "Stxbp1", "Atp6v0e", "Atp6v0c", "Atp6v1e1", "Slc1a1", "Ap2m1", "Cltb", "Atp6v1g2", "Vamp2", "Nsf", "Slc1a3", "Stx3", "Atp6v1h", "Atp6v1f", "Stx1a", "Ap2a1", "Slc6a1", "Clta", "Napa", "Atp6v0a1", "Atp6v0e2", "Atp6v1b2", "Dnm3", "Slc1a2", "Atp6v1g1", "Unc13c", "Unc13a", "Unc13b", "Cplx2", "Cplx1", "Cltc", "Atp6v0b", "Dnm1", "Slc17a6", "Slc17a8", "Ap2a2",]
ps_genes = [ "Slc18a3", "Slc6a7", "Slc32a1", "Unc13c", "Unc13b", "Cplx2", "Cplx3", "Slc6a1", "Slc17a7", "Slc17a8",]
facs_ps_genes = [ "Unc13c", "Unc13b", "Cplx2", "Cplx3", "Slc6a1", "Slc17a7", "Slc17a8",]
npp_genes = []
[mmu04130]
pathway_name = "SNARE interactions in vesicular transport "
hk_genes = [ "Gosr1", "Stx4a", "Stx17", "Bet1l", "Stx18", "Ykt6", "Stx5a", "Gosr2", "Snap29", "Sec22b", "Vti1b", "Stx8",]
facs_genes = [ "Bet1", "Stx4a", "Snap23", "Stx6", "Vamp1", "Vamp3", "Stx1a", "Vamp4", "Stx7", "Gosr2", "Stx1b", "Sec22b", "Vti1b", "Vamp2", "Stx3",]
ps_genes = [ "Vamp1",]
facs_ps_genes = [ "Vamp1",]
npp_genes = []
[mmu04514]
pathway_name = "Cell adhesion molecules "
hk_genes = [ "Ptprs",]
facs_genes = [ "Cldn10", "Glg1", "Icam2", "Slitrk4", "Cldn11", "Nfasc", "Esam", "Itgb1", "Cldn5", "Jam2", "Nrxn1", "Nrxn3", "Cntnap2", "Ocln", "Ptprm", "Nrcam", "Nlgn3", "Cadm1", "Nlgn1", "Ncam1", "H2-T23", "Sdc2", "Cd34", "Itgav", "Itga6", "H2-D1", "Pecam1", "Slitrk2", "Mag", "F11r", "Mpzl1", "Alcam", "Nlgn2", "Lrrc4c", "Cldn12", "Ncam2", "Cntn1", "Jam3", "Negr1", "H2-K1", "Ptprd", "Ptprs", "Vcam1",]
ps_genes = [ "Ptprm", "Ntng1", "Ptprf", "Itgav", "Ptprd", "Alcam", "Itga4", "Lrrc4c", "Igsf11", "Cdh4", "Slitrk1", "Itga8", "Ncam2", "H2-M3",]
facs_ps_genes = [ "Ptprm", "Itgav", "Ptprd", "Alcam", "Lrrc4c", "Ncam2",]
npp_genes = []
Raw
KEGG_pathways_info.csv
pathway_id pathway_name n_genes in_hk perc_in_hk in_facs in_ps in_both in_npp
mmu04710 Circadian rhythm 34 10 0.29 16 4 2 0
mmu04713 Circadian entrainment 98 8 0.08 50 19 12 2
mmu00010 Glycolysis / Gluconeogenesis 67 9 0.13 31 0 0 0
mmu00620 Pyruvate metabolism 44 4 0.09 22 0 0 0
mmu00190 Oxidative phosphorylation 135 8 0.06 88 0 0 0
mmu03008 Ribosome biogenesis in eukaryotes 121 39 0.32 25 1 1 0
mmu03010 Ribosome 177 30 0.17 73 0 0 0
mmu04310 Wnt signaling pathway 172 34 0.2 56 17 7 0
mmu04152 AMPK signaling pathway 127 41 0.32 42 7 2 0
mmu04350 TGF-beta signaling pathway 110 19 0.17 29 8 1 0
mmu04010 MAPK signaling pathway 301 48 0.16 99 36 22 0
mmu04014 Ras signaling pathway 235 36 0.15 83 26 16 0
mmu04020 Calcium signaling pathway 253 15 0.06 76 47 26 7
mmu04024 cAMP signaling pathway 224 21 0.09 82 24 14 12
mmu03018 RNA degradation 84 32 0.38 31 0 0 0
mmu04120 Ubiquitin mediated proteolysis 147 64 0.44 70 0 0 0
mmu04140 Autophagy - animal 142 66 0.46 62 3 2 0
mmu04142 Lysosome 135 24 0.18 69 0 0 0
mmu04721 Synaptic vesicle cycle 77 8 0.1 49 10 7 0
mmu04130 SNARE interactions in vesicular transport 33 12 0.36 15 1 1 0
mmu04514 Cell adhesion molecules 183 1 0.01 43 14 6 0
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genes_pathways.ipynb
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