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Installing Numerical Computing Stack on Compute Cluster. Includes Numpy, SciPy, Pandas, Matplotlib, Sklearn
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| #!/usr/bin/sh | |
| # Recommended to run this as sudo | |
| mkdir setup | |
| cd setup | |
| echo 'Installing Numpy.....' | |
| wget http://nchc.dl.sourceforge.net/project/numpy/NumPy/1.9.2/numpy-1.9.2.tar.gz | |
| tar -zxvf numpy-1.9.2.tar.gz | |
| cd numpy-1.9.2 | |
| python setup.py install --user | |
| cd .. | |
| echo 'Installing SetupTools.....' | |
| wget https://pypi.python.org/packages/source/s/setuptools/setuptools-18.3.2.tar.gz#md5=d30c969065bd384266e411c446a86623 | |
| tar -zxvf setuptools-18.3.2.tar.gz | |
| cd setuptools-18.3.2 | |
| python setup.py install --user | |
| cd .. | |
| echo 'Installing dateutils....' | |
| wget http://labix.org/download/python-dateutil/python-dateutil-1.5.tar.gz | |
| tar -zxvf python-dateutil-1.5.tar.gz | |
| cd python-dateutil-1.5 | |
| python setup.py install --user | |
| cd .. | |
| echo 'Installing pandas....' | |
| wget https://pypi.python.org/packages/source/p/pandas/pandas-0.16.2.tar.gz\#md5\=a92787bcdf0fc0c6d5f4fe4877335ab5 | |
| tar -zxvf pandas-0.16.2.tar.gz | |
| cd pandas-0.16.2 | |
| python setup.py install --user | |
| cd .. | |
| echo 'Installing matplotlib....' | |
| wget https://downloads.sourceforge.net/project/matplotlib/matplotlib/matplotlib-1.4.3/matplotlib-1.4.3.tar.gz | |
| tar -zxvf matplotlib-1.4.3.tar.gz | |
| cd matplotlib-1.4.3 | |
| python setup.py install --user | |
| cd .. | |
| ''' | |
| echo 'Installing ATLAS....' | |
| wget http://sourceforge.net/projects/math-atlas/files/Stable/3.10.2/atlas3.10.2.tar.bz2 | |
| tar -jxvf atlas3.10.2.tar.bz2 | |
| cd ATLAS | |
| mkdir ATLAS_build | |
| cd ATLAS_build | |
| echo 'Turning off CPU Throttling' | |
| sudo /usr/bin/cpufreq-selector -g performance | |
| echo 'Building Lapack...' | |
| wget http://www.netlib.org/lapack/lapack-3.5.0.tgz | |
| tar zxvf lapack-3.5.0.tgz | |
| cd lapack-3.5.0 | |
| cp INSTALL/make.inc.gfortran make.inc | |
| # Change code in make.inc | |
| # OPTS = -02 -fPIC | |
| # NOOPT = -O0 -fPIC | |
| cd SRC | |
| make | |
| cd .. | |
| ../configure -b 64 -Fa alg -fPIC --with-netlib-lapack-tarfile=lapack-3.5.0.tgz | |
| make | |
| cd lib | |
| make shared | |
| make ptshared | |
| cd ../.. | |
| ''' | |
| echo 'Installing OpenBLAS....' | |
| git clone git://github.com/xianyi/OpenBLAS | |
| cd OpenBLAS && make FC=gfortran | |
| sudo make PREFIX=/opt/OpenBLAS install | |
| echo "export LD_LIBRARY_PATH=/opt/OpenBLAS/lib:$LD_LIBRARY_PATH" >> ~/.bashrc | |
| cd .. | |
| sudo ldconfig | |
| cd .. | |
| echo 'Installing SciPy....' | |
| wget http://sourceforge.net/projects/scipy/files/scipy/0.16.0/scipy-0.16.0.tar.gz | |
| tar -zxvf scipy-0.16.0.tar.gz | |
| cd scipy-0.16.0 | |
| python setup.py install --user | |
| cd .. | |
| echo 'Installing Scikit-learn...' | |
| wget https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.16.1.tar.gz\#md5\=363ddda501e3b6b61726aa40b8dbdb7ecd | |
| tar -zxvf scikit-learn-0.16.1.tar.gz | |
| python setup.py install --user | |
| cd .. | |
| echo 'Cleaning up.....' | |
| cd .. | |
| rm -rf setup |
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