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Parashar parashardhapola

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CEO @ NygenAnalytics | PhD in Computational biology. Working with single-cell genomics, scalable systems and cloud deployment

parashardhapola / quadFinder.py

Created August 10, 2016 12:27

Class for searching G-quadruplex motifs. (Part of QuadBase2 webserver)

	import re
	from itertools import groupby
	import os

	"""
	MIT License
	Copyright (c) [2016] [Parashar Dhapola]
	Permission is hereby granted, free of charge, to any person obtaining a copy
	of this software and associated documentation files (the "Software"), to deal
	in the Software without restriction, including without limitation the rights

parashardhapola / GeneImage.py

Last active May 10, 2024 15:23

A pure python code to draw gene diagrams with introns and exons and draw markers ('lollipops') at random positions on the gene

	import matplotlib.pyplot as plt

	"""
	MIT License
	Copyright (c) [2016] [Parashar Dhapola]
	Permission is hereby granted, free of charge, to any person obtaining a copy
	of this software and associated documentation files (the "Software"), to deal
	in the Software without restriction, including without limitation the rights
	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
	copies of the Software, and to permit persons to whom the Software is

parashardhapola / chrom_vis.py

Created July 18, 2016 06:19

A class for creating annotated chromosome maps (akin to ideograms sans bands) in pure python. Not fully tested but works for me.

	import numpy as np
	import matplotlib as mpl
	import matplotlib.pyplot as plt
	import pandas as pd # Not used here but will be required for creating dataframe
	import re
	import seaborn.apionly as sns

	"""
	MIT License