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Homebrew build logs for gdal on macOS 12 | |
Build date: 2022-11-09 14:53:50 |
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FROM rocker/r-devel:latest | |
RUN apt update && apt install -y git flex | |
RUN git clone git://gcc.gnu.org/git/gcc.git gcc11 | |
RUN cd gcc11 && ./contrib/download_prerequisites | |
RUN mkdir gcc-build && cd gcc-build && ../gcc11/configure -disable-multilib --enable-languages=c,c++,fortran | |
RUN cd gcc-build && make -j4 && make install | |
RUN echo 'LD_LIBRARY_PATH="/usr/local/lib64:${R_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH}"' >> /usr/lib/R/etc/ldpaths | |
RUN mkdir ~/.R && echo 'CXX11=/usr/local/bin/g++' > ~/.R/Makevars && echo 'CXX=/usr/local/bin/g++' >> ~/.R/Makevars && echo 'CC=/usr/local/bin/gcc' >> ~/.R/Makevars |
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library(tidyverse) | |
library(argodata) # remotes::install_github("paleolimbot/argodata") | |
argodata:::use_dev_cache() | |
urls <- argo_global_prof() %>% | |
head(100) %>% | |
argo_url() | |
dir <- tempfile() | |
dir.create(dir) |
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stream_file <- "~/Dropbox/delineatens/dem/streams.shp" | |
# full read by OGR/sf | |
system.time(streams_sf <- sf::read_sf(stream_file)) | |
# feature-level summaries by OGR/vapour | |
system.time( | |
stream_ext_vapour <- | |
vapour::vapour_read_extent(dirname(stream_file), layer = "streams") | |
) |
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FROM rocker/r-ubuntu:18.04 | |
# RStudio Package Manager cache of June 3, 2020 | |
ENV RSPM https://packagemanager.rstudio.com/all/__linux__/bionic/290 | |
# system dependencies for R packages | |
RUN apt-get update && apt-get install -y libcurl4-openssl-dev libxml2-dev libssl-dev | |
# install R package dependencies | |
RUN Rscript -e "install.packages('remotes')" |
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poly_df <- read.csv( | |
url("https://gist.github.com/will-r-chase/ac1c1b3ba96a761a7d8d70af860bf663/raw/97c68537ad35254721ed55b12b696af6e424cd4d/overlapping_polys.csv") | |
) | |
# geos approach | |
poly_geos <- geos::geos_make_polygon( | |
poly_df$x, poly_df$y, | |
feature_id = poly_df$id | |
) |
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## Emacs, make this -*- mode: sh; -*- | |
## start with the Docker 'base R' Debian-based image | |
FROM r-base:latest | |
## This handle reaches Carl and Dirk | |
MAINTAINER "Carl Boettiger and Dirk Eddelbuettel" rocker-maintainers@eddelbuettel.com | |
## Remain current | |
RUN apt-get update -qq \ |
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library(sf) | |
library(geos) | |
states <- readRDS(url("https://biogeo.ucdavis.edu/data/gadm3.6/Rsf/gadm36_USA_1_sf.rds")) | |
counties <- readRDS(url("https://biogeo.ucdavis.edu/data/gadm3.6/Rsf/gadm36_USA_2_sf.rds")) | |
states_sfc <- states$geometry %>% st_set_crs(NA) | |
states_wkb <- st_as_binary(states_sfc) | |
states_geos <- geos_read_wkb(states_wkb) |
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# loading in this order causes sf to crash if libgeos links to system GEOS | |
# remotes::install_github("paleolimbot/libgeos", configure.vars = "USE_SYSTEM_GEOS=YES") | |
library(libgeos) | |
library(sf) | |
nc <- read_sf(system.file("shape/nc.shp", package = "sf")) | |
nc1 <- nc[1, , drop = FALSE] | |
st_intersects(nc, nc1) |
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library(dplyr) | |
library(sf) | |
library(s2) # remotes::install_github("r-spatial/s2") | |
counties_sf <- readRDS(url("https://biogeo.ucdavis.edu/data/gadm3.6/Rsf/gadm36_USA_2_sf.rds")) %>% | |
select(state = NAME_1, county = NAME_2) %>% | |
# USA atlas projection | |
st_transform(2163) | |
counties_s2 <- counties_sf %>% |
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