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October 12, 2017 14:57
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working example of https://plot.ly/python/network-graphs/ to be pasted into Jupyter notebook
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import plotly.offline as py | |
from plotly.graph_objs import * | |
py.init_notebook_mode(connected=True) | |
%matplotlib inline | |
import networkx as nx | |
G=nx.random_geometric_graph(200,0.125) | |
pos=nx.get_node_attributes(G,'pos') | |
dmin=1 | |
ncenter=0 | |
for n in pos: | |
x,y=pos[n] | |
d=(x-0.5)**2+(y-0.5)**2 | |
if d<dmin: | |
ncenter=n | |
dmin=d | |
p=nx.single_source_shortest_path_length(G,ncenter) | |
edge_trace = Scatter( | |
x=[], | |
y=[], | |
line=Line(width=0.5,color='#888'), | |
hoverinfo='none', | |
mode='lines') | |
for edge in G.edges(): | |
x0, y0 = G.node[edge[0]]['pos'] | |
x1, y1 = G.node[edge[1]]['pos'] | |
edge_trace['x'] += [x0, x1, None] | |
edge_trace['y'] += [y0, y1, None] | |
node_trace = Scatter( | |
x=[], | |
y=[], | |
text=[], | |
mode='markers', | |
hoverinfo='text', | |
marker=Marker( | |
showscale=True, | |
# colorscale options | |
# 'Greys' | 'Greens' | 'Bluered' | 'Hot' | 'Picnic' | 'Portland' | | |
# Jet' | 'RdBu' | 'Blackbody' | 'Earth' | 'Electric' | 'YIOrRd' | 'YIGnBu' | |
colorscale='YIGnBu', | |
reversescale=True, | |
color=[], | |
size=10, | |
colorbar=dict( | |
thickness=15, | |
title='Node Connections', | |
xanchor='left', | |
titleside='right' | |
), | |
line=dict(width=2))) | |
for node in G.nodes(): | |
x, y = G.node[node]['pos'] | |
node_trace['x'].append(x) | |
node_trace['y'].append(y) | |
#if you have networkx 2.0 then replace "adjacency_list" with "adjacency" | |
for node, adjacencies in enumerate(G.adjacency_list()): | |
node_trace['marker']['color'].append(len(adjacencies)) | |
node_info = '# of connections: '+str(len(adjacencies)) | |
node_trace['text'].append(node_info) | |
fig = Figure(data=Data([edge_trace, node_trace]), | |
layout=Layout( | |
title='<br>Network graph made with Python', | |
titlefont=dict(size=16), | |
showlegend=False, | |
hovermode='closest', | |
margin=dict(b=20,l=5,r=5,t=40), | |
annotations=[ dict( | |
text="Python code: <a href='https://plot.ly/ipython-notebooks/network-graphs/'> https://plot.ly/ipython-notebooks/network-graphs/</a>", | |
showarrow=False, | |
xref="paper", yref="paper", | |
x=0.005, y=-0.002 ) ], | |
xaxis=XAxis(showgrid=False, zeroline=False, showticklabels=False), | |
yaxis=YAxis(showgrid=False, zeroline=False, showticklabels=False))) | |
py.iplot(fig, filename='networkx') |
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