Created
April 5, 2018 15:53
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?> | |
<neuroml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.neuroml.org/schema/neuroml2" id="NeuroML_2_loaded_via_LEMS_by_Geppetto" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.githubusercontent.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd"> | |
<ionChannel species="non_specific" type="ionChannelHH" conductance="10pS" id="ih_rod"> | |
<notes>Single ion channel description, adapted from Liu XD, Kourennyi DE (2004) Effects of tetraethylammonium on Kx channels and simulated light response in rod photoreceptors. Ann Biomed Eng 32:1428-42</notes> | |
<gateHHrates instances="1" id="n"> | |
<forwardRate type="HHExpRate" rate="1per_s" midpoint="-82mV" scale="-10.66mV"/> | |
<reverseRate type="HHExpRate" rate="1per_s" midpoint="-82mV" scale="10.66mV"/> | |
</gateHHrates> | |
</ionChannel> | |
<ionChannel species="k" type="ionChannelHH" conductance="10pS" id="kv_rod"> | |
<notes>Single Channel description adapted from Y. Kamiyama, T. O'Sura, S. Usui (1996): Ionic current model of the vertebrate rod photoreceptor, Vision Research.</notes> | |
<gateHHrates instances="4" id="n"> | |
<forwardRate type="HHExpLinearRate" rate="0.11per_ms" midpoint="20mV" scale="22mV"/> | |
<reverseRate type="HHExpRate" rate="0.0625per_ms" midpoint="0mV" scale="-80mV"/> | |
</gateHHrates> | |
</ionChannel> | |
<ionChannel species="k" type="ionChannelHH" conductance="10pS" id="kx_rod"> | |
<notes>Single Channel description adapted from Y. Kamiyama, T. O'Sura, S. Usui (1996): Ionic current model of the vertebrate rod photoreceptor, Vision Research.</notes> | |
<gateHHrates instances="1" id="n"> | |
<forwardRate type="HHExpRate" rate="0.66per_s" midpoint="-49.9mV" scale="11.4mV"/> | |
<reverseRate type="HHExpRate" rate="0.66per_s" midpoint="-49.9mV" scale="-11.4mV"/> | |
</gateHHrates> | |
</ionChannel> | |
<ionChannel species="non_specific" type="ionChannelPassive" conductance="0.5pS" id="leak"/> | |
<gapJunction conductance="0.5nS" id="rod_rod_gap"/> | |
<pulseGenerator delay="50ms" duration="200ms" amplitude="0.0032nA" id="pulseGen1"/> | |
</neuroml> |
that seems to be failing as well -- I'd try to replace these channels with the ones from hhcell to check whether the channel defs themselves are causing trouble (which I doubt)
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try changing ionchannel to ionchannelHH to see if it works