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lukauskas/Liu et al., ABBS, 2009 - Table 3.ipynb

Created October 5, 2020 18:40
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liu-et-al-abbs-2009-table-3-augmented.tsv
Unigene Protein (Gene) CHR Ratio symbol entrez_gene ensembl_gene uniprot
Hs.334370 Brain expressed, X-linked 1 (BEX1) Xq22 5.55 BEX1 55859 ENSG00000133169 Q9HBH7
Hs.690634 Heat shock 70 kDa protein 1-like (HSPA1L) 5.43 HSPA1L 3305 ENSG00000236251;ENSG00000226704;ENSG00000234258;ENSG00000206383;ENSG00000204390 P34931
Hs.631926 Cadherin, EGF LAG seven-pass G-type receptor 3, flamingoDrosophilahomolog (CELSR3) 3p24.1-p21.2 4.92 CELSR3 1951 ENSG00000008300 Q9NYQ7
Hs.465506 Phosphatidic acid phosphatase type 2C (PPAP2C) 19p13 4.14 PLPP2 8612 ENSG00000141934 O43688
Hs.432648 heat shock 70 kDa protein 2 (HSPA2) 14q24.1 3.97 HSPA2 3306 ENSG00000126803 P54652
Hs.69089 galactosidase, _ (GLA) Xq22 3.85 GLA 2717 ENSG00000102393 P06280
Hs.433750 eukaryotic translation initiation factor 4 _, 1 (EIF4G1) 3q27-qter 3.8 EIF4G1 1981 ENSG00000114867 Q04637
Hs.533628 KIAA0133 3.75 URB2 9816 ENSG00000135763 Q14146
Hs.279929 Transmembrane emp24 protein transport domain containing 9 (TMED9) 5q35.3 3.44 TMED9 54732 ENSG00000184840 Q9BVK6
Hs.516874 chromogranin B (CHGB) 20pter-p12 3.42 CHGB 1114 ENSG00000089199 P05060
Hs.74565 amyloid _ precursor-like protein 1 (APLP1) 19q13.1 3.4 APLP1 333 ENSG00000105290 P51693
Hs.650382 RAB5C, member RAS oncogene family (RAB5C) 17q21.2 3.28 RAB5C 5878 ENSG00000108774 P51148
Hs.23581 leptin receptor (LEPR) 1 3.25 LEPR 3953 ENSG00000116678 P48357
Hs.518403 Phosphatidylinositol glycan anchor biosynthesis class Z (PIGZ) 3q29 3.24 PIGZ 80235 ENSG00000119227 Q86VD9
Hs.313 secreted phosphoprotein 1 (SPP1) 4q21-q25 3.12 SPP1 6696 ENSG00000118785 P10451
Hs.232618 secretogranin III (SCG3) 15q21 2.87 SCG3 29106 ENSG00000104112 Q8WXD2
Hs.47166 Chromosome 3 open reading frame 14 (C3orf14) 3p14.3 2.86 C3orf14 57415 ENSG00000114405 Q9HBI5
Hs.514527 baculoviral IAP repeat-containing 5 (BIRC5) 17q25 2.86
Hs.530003 solute carrier family 2 member 5 (SLC2A5) 1p36.2 2.84 SLC2A5 6518 ENSG00000142583 P22732
Hs.496068 PCTAIRE protein kinase 1 (PCTK1) xp11.3-p11.23 2.84 CDK16 5127 ENSG00000102225 Q00536
Hs.632642 phosphoglycerate mutase 2 (muscle) (PGAM2) 7p13-p12 2.79 PGAM2 5224 ENSG00000164708 P15259
Hs.502842 calpain 1, (mu/I) large subunit (CAPN1) 11q13 2.71 CAPN1 823 ENSG00000014216 P07384
Hs.655168 Sideroflexin 4 (SFXN4) 10 2.61 SFXN4 119559 ENSG00000183605 Q6P4A7
Hs.645248 phosphate cytidylyltransferase 2 (PCYT2) 17q25.3 2.58
Hs.465985 arsA (bacterial) arsenite transporter homolog 1 (ASNA1) 19q13.3 2.51 GET3 439 ENSG00000198356 O43681
Hs.527295 ectonucleotide pyrophosphatase/phosphodiesterase 1 (ENPP1) 6q22-q23 2.5 ENPP1 5167 ENSG00000197594 P22413
Hs.5148 TRAF-type zinc finger domain containing 1 (TRAFD1) 12q 2.49 TRAFD1 10906 ENSG00000135148 O14545
Hs.194754 Chromosome 1 open reading frame 107 (C1orf107) 1q32.3-q41 2.42 UTP25 27042 ENSG00000117597 Q68CQ4
Hs.90303 tuberous sclerosis 2 (TSC2) 16p13.3 2.4 TSC2 7249 ENSG00000103197 P49815
Hs.631655 Leprecan-like 2 (LEPREL2) 12q13 2.35 P3H3 10536 ENSG00000110811 Q8IVL6
Hs.274402 heat shock 70 kDa protein 1B (HSPA1B) 6p21.3 2.34 HSPA1B 3304 ENSG00000232804;ENSG00000204388;ENSG00000231555;ENSG00000212866;ENSG00000224501 P0DMV8;P0DMV9
Hs.643454 dystrobrevin, _ #DTNA#, transcript variant DTN2 (DTNA) 18q12 2.34 DTNA 1837 ENSG00000134769 Q9Y4J8
Hs.500375 ectonucleoside triphosphate diphosphohydrolase 6 (putative) (ENTPD6) 2.33 ENTPD6 955 ENSG00000197586 O75354
Hs.500916 internexin neuronal intermediate filament protein, alpha (INA) 10q25.1 2.32 INA 9118 ENSG00000148798 Q16352
Hs.654401 IMP (inosine monophosphate) dehydrogenase 1 (IMPDH1) 7q31.3-q32 2.32 IMPDH1 3614 ENSG00000106348 P20839
Hs.631992 Dystonin (DST) 2.31
Hs.135270 collapsin response mediator protein 1 (CRMP1) 4p16.1-p15 2.3 CRMP1 1400 ENSG00000072832 Q14194
Hs.524947 CDC20 cell division cycle 20S. cerevisiaehomolog (CDC20) 9q13-q21 2.28 CDC20 991 ENSG00000117399 Q12834
Hs.651212 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, _ polypeptide (YWHAB) 2.27
Hs.500197 RaP2 interacting protein 8 (RPIP8) 17q21.31 2.26 RUNDC3A 10900 ENSG00000108309 Q59EK9
Hs.533772 Meteorin, glial cell differentiation regulator (METRN) 16 2.24 METRN 79006 ENSG00000103260 Q9UJH8
Hs.576875 DEAD/H box polypeptide 21 (DDX21) 10q21 2.22
Hs.435255 UBX domain-containing 1 (UBXD1) 19p13 2.22 UBXN6 80700 ENSG00000167671 Q9BZV1
Hs.464391 tubulin-specific chaperone d (TBCD) 17 2.21 TBCD 6904 ENSG00000278759;ENSG00000141556 Q9BTW9
Hs.479439 BH-protocadherin (brain-heart) (PCDH7) 4p15 2.19 PCDH7 5099 ENSG00000169851 O60245
Hs.591234 gap junction protein, _2 (GJB2) 13q11-q12 2.18
Hs.528572 vinexin _ (SH3-containing adaptor molecule-1) (SORBS3) 8p21.2 2.17 SORBS3 10174 ENSG00000120896 O60504
Hs.464336 procollagen-proline, 2-oxoglutarate 4-dioxygenase(proline 4-hydroxylase), _ polypeptide (P4HB) 17q25 2.16 P4HB 5034 ENSG00000185624 P07237
Hs.9194 UBA domain containing 1 (UBAC1) 9q34.3 2.11 UBAC1 10422 ENSG00000130560 Q9BSL1
Hs.518414 Leucine-rich repeat and calponin homology domain containing 3 (LRCH3) 2.1 LRCH3 84859 ENSG00000186001 Q96II8
Hs.520028 heat shock 70 kDa protein 1A (HSPA1A) 6p21.3 2.09
Hs.808 heterogeneous nuclear ribonucleoprotein F (HNRPF) 2.08 HNRNPF 3185 ENSG00000169813 P52597
Hs.23413 ATAD3B220 sequences 1p36.32 2.08 ATAD3A 55210 ENSG00000197785 Q9NVI7
Hs.355934 splicing factor proline/glutamine rich 1pter-p32.3 2.06 SFPQ 6421 ENSG00000116560 P23246
Raw
liu-et-al-abbs-2009-table-3.tsv
Unigene Protein (Gene) CHR Ratio
Hs.334370 Brain expressed, X-linked 1 (BEX1) Xq22 5.55
Hs.690634 Heat shock 70 kDa protein 1-like (HSPA1L) 5.43
Hs.631926 Cadherin, EGF LAG seven-pass G-type receptor 3, flamingoDrosophilahomolog (CELSR3) 3p24.1-p21.2 4.92
Hs.465506 Phosphatidic acid phosphatase type 2C (PPAP2C) 19p13 4.14
Hs.432648 heat shock 70 kDa protein 2 (HSPA2) 14q24.1 3.97
Hs.69089 galactosidase, _ (GLA) Xq22 3.85
Hs.433750 eukaryotic translation initiation factor 4 _, 1 (EIF4G1) 3q27-qter 3.80
Hs.533628 KIAA0133 3.75
Hs.279929 Transmembrane emp24 protein transport domain containing 9 (TMED9) 5q35.3 3.44
Hs.516874 chromogranin B (CHGB) 20pter-p12 3.42
Hs.74565 amyloid _ precursor-like protein 1 (APLP1) 19q13.1 3.40
Hs.650382 RAB5C, member RAS oncogene family (RAB5C) 17q21.2 3.28
Hs.23581 leptin receptor (LEPR) 1 3.25
Hs.518403 Phosphatidylinositol glycan anchor biosynthesis class Z (PIGZ) 3q29 3.24
Hs.313 secreted phosphoprotein 1 (SPP1) 4q21-q25 3.12
Hs.232618 secretogranin III (SCG3) 15q21 2.87
Hs.47166 Chromosome 3 open reading frame 14 (C3orf14) 3p14.3 2.86
Hs.514527 baculoviral IAP repeat-containing 5 (BIRC5) 17q25 2.86
Hs.530003 solute carrier family 2 member 5 (SLC2A5) 1p36.2 2.84
Hs.496068 PCTAIRE protein kinase 1 (PCTK1) xp11.3-p11.23 2.84
Hs.632642 phosphoglycerate mutase 2 (muscle) (PGAM2) 7p13-p12 2.79
Hs.502842 calpain 1, (mu/I) large subunit (CAPN1) 11q13 2.71
Hs.655168 Sideroflexin 4 (SFXN4) 10 2.61
Hs.645248 phosphate cytidylyltransferase 2 (PCYT2) 17q25.3 2.58
Hs.465985 arsA (bacterial) arsenite transporter homolog 1 (ASNA1) 19q13.3 2.51
Hs.527295 ectonucleotide pyrophosphatase/phosphodiesterase 1 (ENPP1) 6q22-q23 2.50
Hs.5148 TRAF-type zinc finger domain containing 1 (TRAFD1) 12q 2.49
Hs.194754 Chromosome 1 open reading frame 107 (C1orf107) 1q32.3-q41 2.42
Hs.90303 tuberous sclerosis 2 (TSC2) 16p13.3 2.40
Hs.631655 Leprecan-like 2 (LEPREL2) 12q13 2.35
Hs.274402 heat shock 70 kDa protein 1B (HSPA1B) 6p21.3 2.34
Hs.643454 dystrobrevin, _ #DTNA#, transcript variant DTN2 (DTNA) 18q12 2.34
Hs.500375 ectonucleoside triphosphate diphosphohydrolase 6 (putative) (ENTPD6) 2.33
Hs.500916 internexin neuronal intermediate filament protein, alpha (INA) 10q25.1 2.32
Hs.654401 IMP (inosine monophosphate) dehydrogenase 1 (IMPDH1) 7q31.3-q32 2.32
Hs.631992 Dystonin (DST) 2.31
Hs.135270 collapsin response mediator protein 1 (CRMP1) 4p16.1-p15 2.30
Hs.524947 CDC20 cell division cycle 20S. cerevisiaehomolog (CDC20) 9q13-q21 2.28
Hs.651212 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, _ polypeptide (YWHAB) 2.27
Hs.500197 RaP2 interacting protein 8 (RPIP8) 17q21.31 2.26
Hs.533772 Meteorin, glial cell differentiation regulator (METRN) 16 2.24
Hs.576875 DEAD/H box polypeptide 21 (DDX21) 10q21 2.22
Hs.435255 UBX domain-containing 1 (UBXD1) 19p13 2.22
Hs.464391 tubulin-specific chaperone d (TBCD) 17 2.21
Hs.479439 BH-protocadherin (brain-heart) (PCDH7) 4p15 2.19
Hs.591234 gap junction protein, _2 (GJB2) 13q11-q12 2.18
Hs.528572 vinexin _ (SH3-containing adaptor molecule-1) (SORBS3) 8p21.2 2.17
Hs.464336 procollagen-proline, 2-oxoglutarate 4-dioxygenase(proline 4-hydroxylase), _ polypeptide (P4HB) 17q25 2.16
Hs.9194 UBA domain containing 1 (UBAC1) 9q34.3 2.11
Hs.518414 Leucine-rich repeat and calponin homology domain containing 3 (LRCH3) 2.10
Hs.520028 heat shock 70 kDa protein 1A (HSPA1A) 6p21.3 2.09
Hs.808 heterogeneous nuclear ribonucleoprotein F (HNRPF) 2.08
Hs.23413 ATAD3B220 sequences 1p36.32 2.08
Hs.355934 splicing factor proline/glutamine rich 1pter-p32.3 2.06
Raw
requirements.txt
matplotlib==3.3.2
mygene==3.1.0
numpy==1.19.2
pandas==1.1.2
seaborn==0.11.0
sinfo==0.3.1
tqdm==4.50.0
IPython==7.18.1
jupyter_client==6.1.7
jupyter_core==4.6.3
notebook==6.1.4
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