Created
December 15, 2023 11:59
-
-
Save lexnederbragt/ba1a65c453d7153e5726943b0fd97fda to your computer and use it in GitHub Desktop.
Attempt at a minimal conda env for the lesson "Snakemake for Bioinformatics"
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# attempt at making a minimal conda env for the lesson "Snakemake for Bioinformatics" | |
# https://carpentries-incubator.github.io/snakemake-novice-bioinformatics | |
name: snakemake_lesson | |
channels: | |
- conda-forge | |
- bioconda | |
- defaults | |
dependencies: | |
- bioconda::rename | |
- conda-forge:coreutils | |
- fastqc | |
- fastx_toolkit | |
- gnuplot | |
- graphicsmagick | |
- graphviz | |
- kallisto | |
- multiqc | |
- salmon=1.4.0 | |
- snakemake=5 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Works for my 2017 MacBook Pro.