Last active
August 29, 2015 14:02
-
-
Save lexnederbragt/830b0e56ec615e0a862f to your computer and use it in GitHub Desktop.
blasr from smrtanalysis 2.2.0 used to map channel_110_readv_9_template read from http://figshare.com/articles/A_P_aeruginosa_serotype_defining_single_read_from_our_first_Oxford_Nanopore_run/1052996 to Genbank entry AF498417
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
$ blasr channel_110_read_9_template.fasta AF498417.fasta -m 0 | |
nMatch: 4151 | |
nMisMatch: 578 | |
nIns: 452 | |
nDel: 898 | |
%sim: 68.2843 | |
Score: -10537 | |
Query: channel_110_read_9_template | |
Target: gi|20560066|gb|AF498417.1| | |
Model: a hybrid of global/local non-affine alignment | |
Raw score: -10537 | |
Map QV: 254 | |
Query strand: 0 | |
Target strand: 0 | |
QueryRange: 3 -> 5184 of 8476 | |
TargetRange: 9100 -> 14727 of 14734 | |
3 GGAAA---G-TGCTT-G-CAAGTCTTG-A-CCCCATGTTTC-C-AGA-C- | |
||||| | ||||| | *|||||||| | ***|||||||| | ||| | | |
9100 GGAAAGTGGTTGCTTCGTGAAGTCTTGTATAGGCATGTTTCGCGAGAGCT | |
41 GA-CGAGCAG--C--GGAGGGATTTTCCGTT-C-G--T-AG-TTGGCGT- | |
*| *||||*| | |*||||*||||||||| | | | *| ||||| | | |
9150 CATAGAGCGGCCCAAGAAGGGGTTTTCCGTTCCTGTCTCCGATTGGC-TG | |
79 CTCGGCGCCTATGAGACAGGGAACCTACCG-TGAAT-GCTGCTCCAT-A- | |
***||| |||*||| | | | | *| **| ||||| ||||||**|| | | |
9199 AGAGGC-CCTCTGA-A-A--G-A-GT-GGGCTGAATCGCTGCTTGATGAG | |
125 -G-CG--TTGAGGCAAG-AGGTTA----G-TA--A--ATCCT-C-CCGGA | |
| || ||*| ||||| |||||| | || | *|**| | |*||| | |
9241 CGACGCCTTCA-GCAAGAAGGTTATTTGGATAGTAGGTTGATACGCAGGA | |
159 --TGGATA--A-TA-ATGCCGCGGGGAGCCAGGA-CACTC---A-GCCTA | |
|||| | | *| *|| |||||*||*|*||| ||||| | ||||* | |
9290 TCTGGA-ACGACCACTTG--GCGGGAAGGCGGGACCACTCAAGACGCCTC | |
198 T-GAATGTT-TGGCCTGTTCCCA-CGTGGTTGGATCGGT-AAGA--AC-- | |
| ||*|||| | |*||||||*| |||||||||| || |*|| || | |
9337 TGGAGTGTTCT--CATGTTCCAAGCGTGGTTGGA---GTCATGACCACAG | |
240 CAAAA-TTAT-C-CGT-ACTA-----CATGAGGCTTGT-GGCACGTGGC- | |
*|||| |||| | ||| | || |*|||*|***|| ||| *|| || | |
9382 TAAAAGTTATCCACGTGA-TAGCCGGCCTGAAGAAAGTCGGC-GGT-GCT | |
279 -AGCTAATGCTCAAGGCGGTTGGT-GAAGACTC--AATGGCGGACTTAG- | |
||||||||||||| |||||||*| | |||||| |||||||| | || | |
9429 GAGCTAATGCTCAA-GCGGTTGATCG-AGACTCAAAATGGCGG-C--AGT | |
324 GAAGAGTTCCCATAC-TTCTAATTA-TTCATGTCT-TCTGGTGTATTGGT | |
| | | || |*| || ||| *|||| |||| || ||| | *|*||||| | |
9474 G-A-A-TT-CGA-ACATTC-GATTATTTCA---CTGTCT-G-ATCTTGGT | |
371 GAGTTTGGGCAAGATCTGATT---GCTAG--TA-CTGTTGGT-TGCTGTG | |
|||||||||||*|*||||||| |||*| || ||||||*| |||| || | |
9513 GAGTTTGGGCAGGGTCTGATTGAGGCTGGTATATCTGTTGATGTGCT-TG | |
414 GCGGTAT-A-AT-GATGAGGGAAATG---CGGCAT--TAACGTCGT-TGA | |
|| || | *| |||||||||*||| ||| *| | *|*|||| ||| | |
9562 GC---ATGACCTCGATGAGGGATATGCCTCGG-GTGCT-CCTTCGTCTGA | |
455 TCTGGATATTTC-T-TTAGGAGG--CG-----GTCAAAAACATGGATGTA | |
|*|||||||||| | **|||||| || ||| *||||||||||||| | |
9607 TATGGATATTTCGTGAAAGGAGGCCCGATATAGTC-CAAACATGGATGTA | |
496 --ATTCCGATCTTCTTGAT-CATTAG-TG-C-G-AT---C--AATTGGCA | |
|||||||||||||||*| *|||*| || | | || | *|||||| | |
9656 TCATTCCGATCTTCTTGGTGGATTGGCTGCCAGAATGGCCGGTATTGGC- | |
534 GGG------TGGGGAGTCGCCCTGAACGTGGGTGA--GGC--GAGGGCAG | |
||| |||||||| || |*|| |***|| **| ||||||*| | |
9705 GGGATTATATGGGGAGT---CC-GCAC--GACCGACCTTCAAGAGGGCGG | |
574 C-AGAATACGACT-TTCTCTG-ACGGAAAATGT-T-ACTGGCTATCC--A | |
| |||*||||||| |||| *| ||||||**||| | *|||||||||| | | |
9749 CAAGAGTACGACTGTTCT-GGTACGGAAGGTGTGTGCCTGGCTATCCGGA | |
617 TTCTT--C-AGATATATTG--T-C-CC-CC-AGG-CT--AGG-GCTACCG | |
||||| | |*|||||||| | | || || ||| || ||| ||| | | |
9798 TTCTTGCCAAAATATATTGTTTGCGCCGCCGAGGCCTCAAGGCGCT--C- | |
654 GCGCGA-TGCTGTCTAGGCT-C--GGCAAGCAGGATCCTCCTGGTC-GT- | |
*|*| | |||||| | |||| | *|||||||||| |*|||||| *| | |
9845 ACAC-ATTGCTGT-T-GGCTACAACGCAAGCAGGA---TGCTGGTCATTC | |
698 CCAACTCCGTTTGC-A-CTTA-TAGCCCTGC-GGC-ATGGAGCGCATC-G | |
|||| |*|||| | | ||*| |*| ||||| ||| |**|| || |*| | | |
9889 CCAA--CGGTTT-CGATCTCACTCG-CCTGCAGGCGACCGA-CG-AACAG | |
742 CGGT---CAATGAGGAATGGAGCTGGC--AGAGACGAGC-ATCAGT--TG | |
|||| |*||*||||*|||||||||| ||||*|*||| || | | || | |
9933 CGGTCCGCTATCAGGAGTGGAGCTGGCATAGAGGCCAGCGAT-A-TCGTG | |
784 AGTCCCAGTC--GGACGAGATTCTAGCAGAGGT-CGGGATC-TGCTTCC- | |
|*|**||||| || | ||||||*| | **||| **||||| ||||||| | |
9981 ATTGGCAGTCTAGG-C-AGATTCCA-C-CCGGTAAAGGATCATGCTTCCT | |
829 -T-TC-CAGCT-TAGGTCTGCTGGAACT---CGTTATGC-CACTTGAAGT | |
| || ||||| **|||||||||| || ||||||*| |*||||||| | |
10027 TTGTCGCAGCTGCCGGTCTGCTGG--CTCCACGTTATTCGCGCTTGAAG- | |
871 TTTCTTTTGATCTCCAAC-GGAGCTGCTGTCAT-C-ATGCTGAAGTTGCA | |
||||||||| *|***|| ||||||||||||*| | |||||||| ||||| | |
10074 TTTCTTTTG--GTGGGACGGGAGCTGCTGTCTTCCAATGCTGAA-TTGCA | |
918 TAG----AT-GAGGC-ACCTCATATTAGGGGGAGCGCTTTAATCACTGCT | |
**| || ||*|| |||***|| | |*||||||| ||*||| ||||| | |
10121 GCGCCTCATCGAAGCTACCGGGTA-T--GCGGAGCGC-TTCATC-CTGCT | |
962 TGGCAGA-CAGCAAGATCTA--TTGGTTGCT-TGGCAGCCCATGGATATC | |
||| ||| |*|||||||*|| ||*| || | ||**|| ||||||||||| | |
10166 TGG-AGAGCGGCAAGATGTAGCTTCG-TG-TCTGAAAG-CCATGGATATC | |
1008 TTCTGTCTGCGGTCTCGCAC-CAGGGATTCCCCAATG-TCTT--AG-AGC | |
||||||||||**|||||||| *||||||||||||||| |||| *| ||| | |
10212 TTCTGTCTGCATTCTCGCACGGAGGGATTCCCCAATGTTCTTGGTGAAGC | |
1053 CAT-G-AATGGGATTGCCTTGTA-T-GCACTG--GT-TAGGATGC--ATT | |
||| | *|||||||||||||||| | *||||| || **|||||| *|| | |
10262 CATGGCCATGGGATTGCCTTGTATTACCACTGATGTGGGGGATGCGGCTT | |
1094 ATTTGGCTCGGT------TG-GTCGTCGTTCGGGCGCGCTTTAGGGTCC- | |
|||| |||*||| *| |||||||||| || ||*|| ||*||| | |
10312 ATTT-GCTAGGTAACGACGGTGTCGTCGTTC---CG-GCCTT-GGATCCG | |
1136 AATGC-CTC--C-AAGGTAT-GTAGAAGTAC-CATTCCGTTGGAT-T--- | |
||||| ||| | ||||||| | ||*| | | ||||*|||||||| | | |
10356 AATGCGCTCGGCAAAGGTATCG-AGGA-T-CTCATTGCGTTGGATGTCGA | |
1176 GGGTCGTCGGGCACTTGTGGTAAGG-T-C-CGAC--AGGATTTA-TAACG | |
|||||||||||||| | ||||*||| | | *||| |||||||| | || | |
10403 GGGTCGTCGGGCAC-T-TGGTGAGGCTGCAAGACAGAGGATTTACT--CG | |
1220 CAACTGC-CCAT--CCTAGTG---CTCAGCG-TTCATGAGTCT-CA--G- | |
||||*| |*|| || |||| ||||||| ||||||||||| *| | | |
10449 -AACTTCACGATGGCC-AGTGCCTCTCAGCGTTTCATGAGTCTGTATCGC | |
1259 G----TCTGTGT-GTAAGAAAAGCTT-AC--GC-TGCAGGTTATGTTTAG | |
| ||| ||| **||||||||||| || || ||*||||||||||| | | |
10497 GACATTCT-TGTAAAAAGAAAAGCTTGACGAGCTTGAAGGTTATGTTT-G | |
1300 CCT----C-CATC--GGAATTCGC-TGAAGCC-GTATTGTTGATG--A-T | |
| | |||| |||*||*|| ||||||| |||||||||||| | | | |
10545 --TAAAACGCATCGAGGAGTTTGCATGAAGCCGGTATTGTTGATGATAGT | |
1338 -AAC--TCC-G--TTCTTCATGTCTCACCGTTTACCGGTC-CTGTCGGAG | |
||| *|| | ||||||||||||||||||||||||||| ||||||||| | |
10593 GAACGACCCGGCTTTCTTCATGTCTCACCGTTTACCGGTCGCTGTCGGAG | |
1381 -CCAGCA-AC--G--TGCA-ATA-A-A-AACTA-AAGTACT-CT-A---A | |
|||||| *| | |*|| *|| | | **|*| |*|**|| *| | * | |
10643 CCCAGCAGGCTGGTTTCCAGGTACATATCGCCACACGCCCTGGTGACGCG | |
1415 GTG-AAAAGATCGTCTCCTCCAGGTTTTCTGCACCTGATCTG-ATT-CCA | |
||| |||||||||||||| |*|||||||||||| |*| || ||| ||| | |
10693 GTGAAAAAGATCGTCTCC-CAAGGTTTTCTGCA--TCA--TGAATTGCCA | |
1462 CTGTTCCCGCAGCCG-AAAAAT-C-ATTTCAAGTGGC-GTA--TGC-G-- | |
||| |||*|*|||*| |||||| | *|||| || *|| ||| ||| | | |
10738 CTG-TCCAGAAGCGGAAAAAATCCTTTTTC-AG-AGCTGTATCTGCTGAC | |
1503 -TATGTC--CCACC-TTT-TGGAGATTGC--AATAG-TG-TTTACACCTG | |
|||||| *|*|| ||| |||||||||| **| | || |||||||||| | |
10785 TTATGTCTGGCGCCTTTTGTGGAGATTGCGGCCT-GATGTTTTACACCTG | |
1544 GTTA--AGT-AAGCCGGTAGTAGTGC--TGG-AGTA-C-CC-TAAG-GTG | |
|||| | | ||||||||| | | | ||| *||| | || *|*| *|| | |
10834 GTTACCA-TCAAGCCGGTA--A-T-CTATGGCGGTATCGCCGCACGCTTG | |
1584 GCGCCGGTGAAAGAGAATCGTGGCGGCCGTTT-CAGACGTGG-TTCG--T | |
||||||||| |||*|**||||||||||||||| |*|||*||| |||| | | |
10879 GCGCCGGTG-AAGGGGGTCGTGGCGGCCGTTTCCGGACTTGGTTTCGTTT | |
1630 TCATGAGGCGGAGGGTCTGAA-G-CT--GCG-TTCGGTTTACTGTGTCGC | |
|||| |||**|||||||||| | || ||| ||| | |**||||||||| | |
10928 TCAT--GGCCAAGGGTCTGAAGGCCTGCGCGTTTC-G-TGCCTGTGTCGC | |
1675 CTGGCTTTATCGGCGACCGTT-GGAAAG-AAAAGTTGCGTGTCATCTTTC | |
|||||||||||||||**|*|| ||*||| ||||||||||||||||||||| | |
10974 CTGGCTTTATCGGCGGGCTTTGGGCAAGAAAAAGTTGCGTGTCATCTTTC | |
1723 --AATCCGCGATCGTACGGCTGGTGTA-G-G-TAGTAATGGGTAGCTGAT | |
||||| |||| | | *| || | | | | | | || *| || *| | |
11024 AAAATCC-CGAT-G-A--TC-GG-G-ACGCGCT-G--AT-CG--GC--CT | |
1768 GGGTGGGACAAGGGCGTATAGCGGCCCTTTTG--AATTGCGTTCCTGATT | |
|||| ||| || |*|||||| ||*|*|| |||||||| | |
11058 GGGT---------GCG-AT-----CACTTTTGAAAAGTCCG-TCCTGATT | |
1816 CGCGGTTCCCGTATAGTACTC-GATCTCAG----AGCCGGCTAGACAGG- | |
||||||||**|**|*| || | || |*||| ||||||| *|*|| | |
11092 CGCGGTTCGGGGGTCG-AC-CTGA-CGCAGTACCAGCCGGC---CCCGGA | |
1860 -AG--CCGAAAACGCCATTATTAC-CTAGTCCCGGC-C--TTG--C--GG | |
|| ||| |||||||**|**| | | |*|**|||| | ||| | || | |
11136 AAGCCCCG-AAACGCCGGTGGT-CAC-ATTGGCGGCTCGGTTGCTCAGGG | |
1899 -C-GGGGTGTGCTGG-ATTCGTCGAAAGGCGGCAAATGA-GCTTA-G--G | |
| *||||||||||| |||||||| || ||||||||| | *|||| | | | |
11183 ACAAGGGTGTGCTGGAATTCGTCG-AA-GCGGCAAAT-ATCCTTAGGCAG | |
1942 CGCATGC---CCGGCACA-TTTC--GTGGGATATGGGAGTCATGGGAGTA | |
|||| || |||||||| |||| *| || |*||||*|*| ||| |* | |
11230 CGCA-GCGTACCGGCACATTTTCAACT-GG---TCGGAGACCT-GGA-TC | |
1986 GAGCGATGAAGCCGTC-CCATGGGTCGAGGCGTTGGCC-AACCAGA---- | |
**| | ||| || *| ||| |**|||||*|| | || |||*||| | |
11273 CTG-G--GAA-CC-CCACCA-GTATCGAGCCG-T--CCGAACTAGAGCGT | |
2030 ----G-ATC-----CA--AT---GTG---TGAG---TCTCCAGGAGTAAC | |
| |*| || || ||| || | ||*|||||| ||*| | |
11314 TGGCGTAGCGAGGGCACGATCGAGTGTCTTG-GTTATCGCCAGGA-TATC | |
2059 -C--CCGTCTTCACCCGTTCCCAGCCT-G-CTTTCTTACTTCTTAT--TG | |
| |*||||||*|||||||*|| **| | |*||||**|||||||| || | |
11362 GCGTCTGTCTTCGCCCGTTCGCA-TATAGTCGTTCTGCCTTCTTATCGTG | |
2102 -A-GGCGT-C-GAGCGACGTGACTTC-ACGCGTCGGCTGGGTTCGGGCGT | |
| |||*| | *|| |*|*|| *|| |*|||||||| ||*||||||| | |
11411 AAGGGCTTCCTAAG-GTCCTG--GTCGAGGCGTCGGC---GTGCGGGCGT | |
2147 GCATTGGTCTTGGTAGACGATCTGA-G-A-GGGGGT-CTAGGATGCAACC | |
|| || || || ||||| |*|| | | *|||*| |**||||||||*| | |
11455 GC---GG--TT-GT-GACGA-CCGATGTACCGGGTTGCCGGGATGCAATC | |
2193 CAGGCTGATGTTACGGGCCT--TAACGTG-CGGTTAGTCGTG-TTATGCT | |
|||||||||||||||||||| | |||| ||| | | |||| ||*|||| | |
11497 CAGGCTGATGTTACGGGCCTGCT--CGTGCCGG-T-G-CGTGATTCTGCT | |
2239 GCTCTGGCGGATGCCATTCA-CGTCTGCTT-AGTCG-CGGA-TTGCGCAA | |
|||||||||||||||||||| |||||**|| ||||| |*|| |||||||| | |
11542 GCTCTGGCGGATGCCATTCAGCGTCTTATTGAGTCGCCAGAGTTGCGCAA | |
2285 GGAGCAATGGGGAGATGCT--G-AAGCGTTGGCAG-GTC--G--TTTGCA | |
|*|| || |||||*|||| | *||||||||||| | | | |||||* | |
11592 GAAG--AT-GGGAGCTGCTGGGCGAGCGTTGGCAGAG-CGTGATTTTGCG | |
2327 ATCCCATA-TATCGTCCAACA--ACC---A-ACTTCT-GGGCA-TAGGGA | |
|| |*|*| |||||||||||| ||| | |*||*| ||||| |||||| | |
11638 AT-CGAAAGTATCGTCCAACAGCACCTGGATATTTATCGGGCACTAGGGA | |
2368 GC---GCTTGA--CG-CA-AATGTAATTGAT-AC---AG-AAACGGATTC | |
|| |||||| || || ||||| ||||*| || *| ||*|||||| | |
11687 GCGGAGCTTGACGCGACATAATGT-ATTGGTAACGGGGGCAACCGGATT- | |
2406 CAT-GAGTATCACGCTGGTTATTAAATAGTCTCTGTTCTTCCGGGCAATG | |
||| | |***|*|||||| |*|||||||||||||||||||||| | | | |
11735 CATCG-GGGCCGCGCTGG----TCAATAGTCTCTGTTCTTCCGGGC-A-G | |
2455 ATA-AAGATTT-GACATTAGG-G-CG-C--A-A--TGGGGCCTGG-CACG | |
|| |||*||| |*| **|| | || | | | |||||||||| |*|| | |
11778 -TACAAGGTTTGGGC--CGGGTGCCGCCGAAGAGGTGGGGCCTGGCCTCG | |
2494 ACCAAGAAT-C-CCCTTGCTTC---CTG-A-T-GGCAGTTCTGTTGTCTG | |
| **|**| | |||||||||| *|| | | ||||||||||||||||| | |
11825 A--GGGGTTACTCCCTTGCTTCTGGGTGAACTGGGCAGTTCTGTTGTCTG | |
2536 GGATCCCGTA--CAACCGATACGGTGATGTGTTGTCGTGTGTCATTGC-C | |
|||| *||*| |**|| || | |||**| || | || ||||||| | | |
11873 GGAT-GCGGAGTCGGCC-AT-C---GATACG--GT-G-GT-TCATTGCGC | |
2583 -GCCTTACAGTGTCATCGAATAACGACAGCGCGA-TGCTTAGGTA-AGGA | |
||| **| ||| ||| | |*|*| ||||*|| *||*|**| | **| | |
11912 TGCC-CGC-GTG-CAT-G--TCATG--AGCGAGACGGCCTCCG-ATCCG- | |
2630 C-CGTCGAGGTCCCCAAAG-C-ACGTTC-GGGAGA-GCTTGAGTCTAGGA | |
| |||||||*|||*|||*| | |||||| ||| || *||||| ||| | |
11952 CTCGTCGAGTTCCGCAAGGCCAACGTTCAGGG-GACACTTGA-TCT---- | |
2675 GGTCCC-GG-GGAAG-A---GGGGGCG-GC-GCGTTCCTGTC-TTA--A- | |
|| ||| || ||**| | *||||*| || |||||*| *|| ||| | | |
11996 GG-CCCGGGAGGCCGTATCCCGGGGAGTGCGGCGTTTC-ATCTTTATCAG | |
2713 -TAGAT--AGGTC-ATCTG-GAGGG-AGTG-G-ACGGATTCGGGCC--T- | |
|*||| ||||| || *| ||||| |*|| | *||| ||||*|| | | |
12044 CTCGATAAAGGTCAAT-GGCGAGGGAACTGAGCCCGG--TCGGCCCTATA | |
2752 CTGC--ACCGTCTAGCCCCAATCATGTGCG-TACCTA-ACCG-TTCC-AT | |
|||| ||*||| *| |||||||*||| || |*|||| **|| |||| |* | |
12091 CTGCGGACAGTC-CG-CCCAATCCTGT-CGATCCCTATGGCGTTTCCAAA | |
2796 CGGAAAGCGGAGC-AG-GCTATTGGAT-T--AAGAAGA-A-C-AACTGGA | |
|||*||||||||| || |||||||||| | **||||| | | *|||||| | |
12138 CGGGAAGCGGAGCAAGCGCTATTGGATCTGGCGGAAGAGACCGGACTGGA | |
2838 AG-T-TGA--AT--GAAC-ATTC-GGCTTTATGGTCCCCCA----TTATA | |
*| | ||| || ||*| *|*| || |||||||| ||| |*| | | |
12188 GGTTGTGATCATCCGACCGGTCCTGG-TTTATGGT---CCAGGGGTCA-A | |
2876 GGCCAACGTACA-A-CAT-CTGCGCTGGCTGAAGGGCGAGGGGGCGGAC- | |
|||||||||||| | ||| *||||||||||||||*||| |*|*|| **| | |
12233 GGCCAACGTACAGACCATGATGCGCTGGCTGAAGCGCG-GCGTGC-CCCT | |
2922 GCGTGCTAAACACTA--CAGACCTAAATC--AGTAGTCTGGTGTCACTGG | |
*|*| |||****||| | | | |||| *|||||||||||||*|| | | |
12281 CCCT-CTAGGGGCTATTC--A--T-AATCGGCGTAGTCTGGTGTCGCT-G | |
2968 GACTATCTTCTTGTC-A-CTCATCA--ACCTGCATCGAGCATCCATCAAT | |
|| || *||||||| | ||||||| |||||||||||||||||**| | | |
12324 GA-TA--ATCTTGTCGACCTCATCATCACCTGCATCGAGCATCCGGC--T | |
3014 -CGGTCGGGCAAATTTTCTATAGTTAGC-AAAGT--GGA-ATTT----C- | |
|||||||||||*||||| *|*||*||| |**|| ||| *||| | | |
12369 GCGGTCGGGCAAGTTTTC-CTCGTAAGCGACGGTGAGGATCTTTCCACCA | |
3054 GCGAGTGCTGCTGCGGAG-ATCGGATAGGGCCTTAGGGCACAATAGGCGC | |
*||||| |||||||||| ||*||| *|*||||| ||||*| | **||| | |
12418 CCGAGT--TGCTGCGGAGAATGGGA-CGCGCCTT-GGGCGC--T-CCCGC | |
3103 -GGCCAATGCTG-CTGTT-CCGCCAGTT--ACTTAGTTAAGGGCGGGGTA | |
*||| ||||| ||||| ||||||||| | |**||**| ||||*| | | |
12461 TCGCC--TGCTGCCTGTTCCCGCCAGTTGGA-TCGGTGCA--GCGGCG-A | |
3148 GAGCAGCGT-TGGACTAGGCAGGCATTTAG--C-CCGCCTGTTAGAC--C | |
| || *| ||*|| |||||||||||| | | ||||||| | | | | | |
12505 -A--AG-TTCTGAAC-AGGCAGGCATTT-GCTCGCCGCCTG-T-G-CGGC | |
3192 TAATTGCAAGTC-A-AACCTGAAAA-CCGCC-AGTACTTGGCTGGAC-CG | |
|*|||||||||| | |*|*|||||| ||||| |||*||||||||||| | | |
12546 TCATTGCAAGTCGATATCATGAAAACCCGCCAAGTGCTTGGCTGGACTC- | |
3237 C-CCGGTA-GGGT--A-CAGGCA-T---GCAAA----CCGCTCTTTCCTG | |
| |||||| |||| | |||||| | |*||| ||||||||||||| | |
12595 CGCCGGTAGGGGTGGACCAGGCATTGGAGAAAACCGCCCGCTCTTTCCTG | |
3274 GATC-TCGATGATGAATCTATGGTTGTTTG-T-CAAGC-ATTG-CGAGTA | |
|||| *|*|||||||||||||||||| ||| | |**|| *||| || *| | |
12645 GATCGCCAATGATGAATCTATGGTTG-TTGTTGCCGGCGGTTGCCG-CT- | |
3319 ATTTTCGCTGCTGTCT--CCTAAG-CGTCTT-CCCCCTTCAACGAAATTT | |
*||||*||||||| | || | ||*||| |*||*|| |||**| || | |
12692 -CTTTCCCTGCTGT-TGACC---GCCGGCTTGCGCCGTT--ACGCGA-TT | |
3365 G-CCGCAGCTTGATCGA--T-CACAATGCCCCATG-TCT--CTAGGTGCC | |
| ||||||||||||||| | |*||||||*|*|*| ||| |*||||||| | |
12734 GCCCGCAGCTTGATCGATGTACCCAATGCTCGAAGTTCTCACCAGGTGCC | |
3408 --CTCC-----GGAGCATGTGGCGACT-T--TAAC-GTCCTTAAT-CTGG | |
|*|| ||*|| *|||*|| || | | *| *|||||**| |||| | |
12784 GACGCCTAGGGGGGGC-GGTGTCG-CTATCGT-GCTCTCCTTCCTGCTGG | |
3446 CAGTGCTGCTTGCGGCAATATTGGGCTAAGTG-GA-TGGATC---CCACT | |
||||||||||||||||*|||||||||***||| *| *||||| ||||| | |
12831 CAGTGCTGCTTGCGGCGATATTGGGCGCGGTGAAACCGGATCTGGCCACT | |
3491 -G-ATCACT-GGGGC-GG-ACTGTGGGATCGCATCTTGCTGGGCTTCCAC | |
| ||| || ||||| || | | |||||||||| |||||||||||||*| | |
12881 GGTATC-CTGGGGGCGGGTA-T-TGGGATCGCA--TTGCTGGGCTTCCTC | |
3536 TA--ATC-TGGCCATATCCCTGCCCGTTGGCGTTTGCTCGGCGGCCATTT | |
*| ||| ||||||||||*||||||||||||||||||| |||||| || | |
12926 GACGATCATGGCCATATCGCTGCCCGTTGGCGTTTGCT---CGGCCA-TT | |
3583 TAG-CGCTGCTTCCT-GATG-TGGTAC--G--TGGAGGGTTGCCTGCATT | |
|*| ||*|||||*|| |*|| | |||| | ||||||*||||||||||| | |
12972 TCGCCGGTGCTTGCTGGCTGCT-GTACTGGCTTGGAGGTTTGCCTGCATT | |
3626 GGCC--TTTC-GCCTTGTGGTCG---TGGGGT-AG-T-G-C-CATAGCTG | |
|||| |||| |||||||||||| |||||| *| | | | |||||||| | |
13021 GGCCTTTTTCGGCCTTGTGGTCGATCTGGGGTGGGTTGGACACATAGCTG | |
3665 C-CCGTTCTATCT-G---GGATCG-TAAATCTCT--AA-TTCAT---C-- | |
| *|||||||||| | |||| | |*||||||| || ||||| | | |
13071 CGGCGTTCTATCTGGTATGGAT-GCTCAATCTCTACAATTTCATGGACGG | |
3701 TATCAATGGGATTGCCACCGTTGAGGC--------TGTGCGTTGGC-CTG | |
||||*||||||||||||*||||||||| ||||||||||| ||| | |
13120 TATCGATGGGATTGCCAGCGTTGAGGCTGTGTGTGTGTGCGTTGGCGCTG | |
3742 -CGTG--GGT--TGGTCATATCCT-TAAGG-TCCGATGAGGCATCCGA-G | |
|*|| *|| |||||| *|**| | ||| |||||||||||||||*| | | |
13170 CCCTGCTTGTCGTGGTCA-GTGGTGT-AGGTTCCGATGAGGCATCCCAGG | |
3784 GCGTTTCTTGGCCTCGGCGGCGCT--TAGG-A-TAGAAGTGACGGGATTC | |
||| | |||| |*||||||||| | || | **|**||||||||*||| | |
13218 GCG--T-TTGG--TTGGCGGCGCTGCT-GGCAGCCGCGGTGACGGGGTTC | |
3830 C-TTTCTGGAATATT-TCT-ATGC-TAGATCTTCAT-GGGGAT--TAGTA | |
| |||||||||| || *|| *||| **||||||||| |||||| |*||| | |
13262 CTTTTCTGGAAT-TTCCCTCCTGCGCGGATCTTCATGGGGGATGCTGGTA | |
3873 --AG-TT-TTGGGATG-TA--A----TGCCCTTTCCCTGC-AGCCG-ATG | |
*| || ||||| *| || | ||*||||||||||| ||||| ||| | |
13311 GCGGTTTCTTGGG-GGTTATCATTGGTGGCCTTTCCCTGCAAGCCGCATG | |
3910 GCATTATCGCCGCAACTTTCCGTCTGGGGTCT-ACT-ATCCTGCT-CCGA | |
| *|*||||||||*| | |*|||||||| | *|| |||||||| **|* | |
13360 G--GTCTCGCCGCAGC--T-CTTCTGGGGT-TGGCTCATCCTGCTGGGGG | |
3957 TATTCGACT-TTGATGCCTA-CATGGCTCTTGTTGC-CC--TTGCTGCGG | |
||||| |*| |||||||| | |*||*| |||||||| || ||||||||| | |
13404 TATTC-ATTGTTGATGCC-ACCCTGAC-CTTGTTGCGCCGGTTGCTGCGG | |
4002 CTCGG-GA-AAGGGGTTATGAGGCATCATCGCAGTCACCCA-ACGA-TCT | |
|| || || ||*||||||||| *||||||||||||*|| ||*| |*| | |
13451 ---GGAGACAA-GGTTTATGAGGC-GCATCGCAGTCACGCATACCAGTAT | |
4048 GCTTCTCGTCATTACGGGCG---TCGTCCTGTTACCTATCG-A-TCCGGA | |
|||||||||||||||||||| ||*|||||||||| *|*| | | *||| | |
13496 GCTTCTCGTCATTACGGGCGTCATCTTCCTGTTACC-CTGGCAGT-GGGA | |
4093 GGCATCAACATCTTCTGGTTGTT-AAAC---CA-T--AT-T---A-AAAG | |
||||||||||||||||||||||| **|| || | *| | | ***| | |
13544 GGCATCAACATCTTCTGGTTGTTGCCACTGGCACTGCTTGTCGCAGCGGG | |
4131 GAA-ATCGACGGGATCGATTGATTTTGTT-ATTGGCTACTTAACTCTGGC | |
||| ||||||||*|| |*||| *|||||| |||||||||*|**||||||| | |
13594 GAAGATCGACGGCAT-GCTTG-CTTTGTTGATTGGCTACCTGCCTCTGGC | |
4179 GTTCCT-GAAAACCG-TTTAA-GCC-GAGTTATGGAATCGGA-GCACATG | |
|||||| |****||| ||||| ||| ||||**||||||| | ||*| || | |
13642 GTTCCTGGCGCTCCGTTTTAAGGCCGGAGTCCTGGAATC--ACGCGC-TG | |
4224 C---AATGTCCCGG-TCCCT-GAAGCACAAAGG-CGGATTTT-C-GGAAC | |
| |||||||||| |**|| ||*||*| *|| | |||||| | ||||| | |
13689 CTTGAATGTCCCGGTTGGCTGGAGGCGC--GGGAC-GATTTTCCGGGAAC | |
4266 -T-TAGCTCTGAAAGGAATGTGCGA-CGATGATCAGTAATGGTAGTAACT | |
| || *|*||||||||||||||*| ||||||||||| | || | ||| | |
13736 GTATA-ATATGAAAGGAATGTGCAAGCGATGATCAGT-A--GT-G--ACT | |
4313 A-TGCCGGA-CGCGTGA-TTCGATT-TAG-A--GTACTTGCC--ATC-AG | |
| |||| || *|||||| ||*|*|| **| | |||*||||| |*| || | |
13779 ACTGCC-GATAGCGTGATTTGGGTTCCGGAATGGTATTTGCCAGACCAAG | |
4353 G-AATGGACTTG-CCAGA-TTGTTCGGGTGGATGCAGGTG-AGTGAA--G | |
| ||||||| || ||*|| ||||||||||||||||*|||| |||||| | | |
13828 GAAATGGAC-TGCCCGGACTTGTTCGGGTGGATGCGGGTGCAGTGAAGGG | |
4397 AACTTACTGATGGGATGTTGG-TAAGGTATTGCGT-GACG-CTACCTGGA | |
**||*|*|*||*||||||||| ||| *|||||| |||| || ||| | |
13877 GGCTGATTAATAGGATGTTGGATAA---CTTGCGTGGACGCCT-CCT--- | |
4444 GGGGGATTGCCGCG-C-CC-GAA--GCATTCTTTGTC-GATTGCTTAGAC | |
|||||||||||| | || ||| |||||| | || |*|||| ||| | |
13920 --GGGATTGCCGCGCCGCCAGAAGCGCATTC--T-TCAGGTTGC---GAC | |
4488 GGGATATCAACCT-G-GT-GCGTTC----TGCCTGGCTTTTAACC--GT- | |
|||*|||**||| | || ||*||| ||*||||| ||| || || | |
13962 -GGACATCGGCCTGGTGTGGCTTTCATTGTGGCTGGC-TTT--CCTGGTG | |
4528 C-TCCTCGAGCAAGACACCGAAGACATGATCGATCCCGTTC--GGA-AAC | |
| | ||| | | ||||||||||||||||||| |||||| ||| *|| | |
14008 CGT-CTC--G---G-CACCGAAGACATGATCGAT-CCGTTCGGGGATCAC | |
4574 CCCT-GAT-TTC-TAGCACCGCCTATAAACCGCCAT-CCG-ACTTCATCC | |
*||| |*| ||| ||||**|||||*| ||||||||| ||| *|||||||| | |
14050 GCCTGGCTGTTCATAGCGGCGCCTCT-AACCGCCATCCCGCTCTTCATCC | |
4619 -ATTCGGCATGTACCGGGCGGTGAATGCTACCACCTAGCG-AACGA--CC | |
*||||||||||||||||||||| |||| *|*|||| |*| ||||| || | |
14099 GCTTCGGCATGTACCGGGCGGTG-ATGC-GCTACCT-GGGCAACGACGCC | |
4665 GTGATGACGGCCAGATCGCC-A-GCGGTCA-CATTTCTAAGACT--TGCT | |
*|*|| | | | ||||||| | ||*|||| ||||||***| || |*|| | |
14146 CTTAT--C-G-C-GATCGCCAAGGCCGTCACCATTTCCGCG-CTGGTCCT | |
4710 -TCG-TGCT-G--TACTGGTACC-CAT-CCC-TAATAAGTGAT-CCCCGT | |
||| |||| | |||||||||| | | ||| ******|||*| |||||| | |
14190 GTCGTTGCTGGTCTACTGGTACCGC-TCCCCGCCGGCGGTGGTGCCCCGT | |
4751 T-CCTGGTGTTCATC-ACTGGT-GTT-ACCATGCATGCCTGATC--C--A | |
| |||||||||||*| |||||| ||| |*||||| || |||||| | * | |
14239 TCCCTGGTGTTCAACTACTGGTGGTTGAGCATGC-TG-CTGATCGGCGGC | |
4793 TTGCG--TGGCACATGCGCC--TAATTCAT-CGAGACTGGTA--CTGCTG | |
||||| |||| |||||||| ||*||||| *|*|||||||| |||||| | |
14287 TTGCGTCTGGC-CATGCGCCAGTATTTCATGGGCGACTGGTACTCTGCTG | |
4836 TGCAGTTCGGTAGAGAATGATGGGTTTCTTTACCATCACGCGC-GGATGG | |
||||| ||||| |**| |||| | ||*| ||| | |||||| | |
14336 TGCAG-TCGGT-----ACCA----TTTC--T--CAAC-CGC-CAGGATGG | |
4885 -ATGCCCAGGGTGAATA-CTAT-GAG-GAGGAC-G--GGCAACCAGTTGG | |
*|||||||||||**|| |||| |*| |*||*| | ||||||||||||| | |
14370 CCTGCCCAGGGTGGCTATCTATGGCGCGGGGGCGGCCGGCAACCAGTTGG | |
4928 -TGCCGGCATTGCATTCTCATTC--GCGATGCGTCTAGT-CCGTTCAT-- | |
|| ||||||||| *||||**|| ||||||||||**|| *||||||| | |
14420 TTG-CGGCATTGC-GTCTCGGTCGGGCGATGCGTCCGGTGGCGTTCATCG | |
4972 ACCAT--C---C--A-CGGCAAGCTGATACAT---AAGTCTGC--G--TA | |
|**|| | | | ||*|||*|*|*| ||| **|||||| | || | |
14468 ATGATGACAAGCAGATCGCCAACCGGGT-CATCGCCGGTCTGCGGGTCTA | |
5007 TAGCCGCCAAGCATAT-CGCCA-ATGATC-A-G-GCTAC---CTAG-G-A | |
|| ||||||||||||| ||||| |||||| | | | || | | | | | |
14517 TA-CCGCCAAGCATATCCGCCAGATGATCGACGAG--ACGGGC--GCGCA | |
5047 -GA--TTCTCCTGGGGCGATTCATTTTGATAAAT--AGTAAAGCACCG-G | |
|| ||||||| ||||||||*||**| **|*| *|****||*||| | | |
14562 GGAGGTTCTCCT--GGCGATTCCTTCCG-CCACTCGGGCCCGGCGCCGAG | |
5091 A-ATTCGC-AGT--CTAACGAGCCGTT-----TAAGAAAC--G-G-A--A | |
| ||||*| ||| || *|||||||| | | *|| | | | | | |
14609 AGATTCTCGAGTCCCT--GGAGCCGTTCCCGCT--G-CACGTGCGCAGCA | |
5126 AG---GG----A-GGA--AGAGAAAG-GAAAGTC-GGTAC-A--T---CG | |
*| || | ||| *| |**|| | |*| ||| | | | || | |
14654 TGCCCGGCTTCATGGACCTG-GCCAGCG---GCCGGGT-CAAGGTGGACG | |
5158 ACCTGCAGGAGACTCGAC--C-CTGACCT | |
||||||||||| *|*||| | ||||||| | |
14699 ACCTGCAGGAG-GTGGACATCGCTGACCT |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment