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laserson/opentrons_container_fix.py

Last active March 30, 2018 02:23
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Fix for containers file to reorder based on wells.
Raw
opentrons_container_fix.py
import json
from copy import deepcopy
from itertools import product
from collections import OrderedDict
all_wells = ['{}{}'.format(r, c) for c in range(1, 13) for r in 'ABCDEFGH']
with open('_containers_create.json.bak','r') as ip:
obj = json.load(ip)
for container_name in obj['containers']:
container = obj['containers'][container_name]
unordered_locations = deepcopy(container['locations'])
container['locations'] = OrderedDict()
for well in all_wells:
container['locations'][well] = unordered_locations[well]
with open('_containers_create.json','w') as op:
json.dump(obj, op)
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