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install cdo with grib2, hdf5, netcdf4
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#!/bin/bash | |
# Institut für Wetter- und Klimakommunikation GmbH / Qmet | |
# O. Maywald <maywald@klimagipfel.de> | |
# This should install CDO with grib2, netcdf and HDF5 support. Note that the binaries are in /opt/cdo-install/bin. | |
# For further information look: | |
# http://www.studytrails.com/blog/install-climate-data-operator-cdo-with-netcdf-grib2-and-hdf5-support/ | |
# docker-command | |
# use this command to start a docker container | |
# docker run -it --name cdo --rm -v $(pwd):/opt/cdo-install -w /opt/cdo-install ubuntu:latest bash | |
home=/opt/cdo-install | |
apt-get update && apt-get install -y wget build-essential checkinstall unzip m4 curl libcurl4-gnutls-dev | |
# download, compile and install --> zlib | |
cd $home | |
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/zlib-1.2.8.tar.gz | |
tar -xzvf zlib-1.2.8.tar.gz | |
cd zlib-1.2.8 | |
./configure -prefix=/opt/cdo-install | |
make -j 8 && make -j 8 check && make install | |
# download, compile and install --> hdf5 | |
cd $home | |
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/hdf5-1.10.5.tar.gz | |
tar -xzvf hdf5-1.10.5.tar.gz | |
cd hdf5-1.10.5 | |
./configure -with-zlib=/opt/cdo-install -prefix=/opt/cdo-install CFLAGS=-fPIC | |
make -j 8 && make -j 8 check && make install | |
# download, compile and install --> netCDF | |
cd $home | |
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.7.0.tar.gz | |
tar -xzvf netcdf-4.7.0.tar.gz | |
cd netcdf-4.7.0/ | |
CPPFLAGS=-I/opt/cdo-install/include LDFLAGS=-L/opt/cdo-install/lib ./configure -prefix=/opt/cdo-install CFLAGS=-fPIC | |
make -j 8 && make -j 8 check && make install | |
# download, compile and install --> jasper | |
cd $home | |
wget http://www.ece.uvic.ca/~frodo/jasper/software/jasper-1.900.1.zip | |
unzip jasper-1.900.1.zip | |
cd jasper-1.900.1 | |
./configure -prefix=/opt/cdo-install CFLAGS=-fPIC | |
make -j 8 && make -j 8 check && make install | |
# download, compile and install --> grib_api | |
cd $home | |
wget https://software.ecmwf.int/wiki/download/attachments/3473437/grib_api-1.24.0-Source.tar.gz?api=v2 -O grib_api-1.24.0.tar.gz | |
tar -xzvf grib_api-1.24.0.tar.gz | |
cd grib_api-1.24.0-Source | |
./configure -prefix=/opt/cdo-install CFLAGS=-fPIC -with-netcdf=/opt/cdo-install -with-jasper=/opt/cdo-install | |
make -j 8 && make -j 8 check && make install | |
# download, compile and install --> cdo | |
cd $home | |
wget https://code.mpimet.mpg.de/attachments/download/15653/cdo-1.9.1.tar.gz | |
tar -xvzf cdo-1.9.1.tar.gz | |
cd cdo-1.9.1 | |
./configure -prefix=/opt/cdo-install CFLAGS=-fPIC -with-netcdf=/opt/cdo-install -with-jasper=/opt/cdo-install -with-hdf5=/opt/cdo-install -with-grib_api=/opt/cdo-install/grib_api-1.24.0-Source | |
make -j 8 && make -j 8 check && make install |
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