I've knocked up a system for managing WINE prefixes from the command-line. It's for FISH, because that's what I use, and it's reasonably versatile and maintainable.
Note 1: I'm going to use "prefix" and "bottle" interchangeably.
Note 2: This is for hardcore command-line users, and it's similar to tools like virtualenv and rbenv. Most people would probably want to use Lutris.
Anyway...