Created
March 27, 2023 02:47
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Convert SPLIT-seq Matlab sparse matrices to something useable
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| function mmwrite(filename,A) | |
| mmfile = fopen(filename,'w'); | |
| [M,N] = size(A); | |
| [I,J,V] = find(A); | |
| NZ = length(V); | |
| fprintf(mmfile,'%%%%MatrixMarket matrix coordinate real general\n'); | |
| fprintf(mmfile,'%% Generated %s\n',[date]); | |
| fprintf(mmfile,'%d %d %d\n',M,N,NZ); | |
| for i=1:NZ | |
| fprintf(mmfile,'%d %d %.4g\n',I(i),J(i),V(i)); | |
| end | |
| fclose(mmfile); | |
| end | |
| mats = dir("*.mat"); | |
| for i=1:length(mats) | |
| fn = mats(i).name; | |
| a = load(fn); | |
| [~, basename, ~] = fileparts(fn); | |
| mkdir(basename); | |
| writematrix(a.barcodes,fullfile(basename,'barcodes.txt'),'Delimiter','\t') | |
| writematrix(a.genes,fullfile(basename,'genes.txt'),'Delimiter','\t') | |
| writematrix(a.sample_type,fullfile(basename,'sample_type.txt'),'Delimiter','\t') | |
| mmwrite(fullfile(basename,'DGE.mtx'), a.DGE); | |
| %[i,j,v]=find(a.DGE); | |
| end |
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