Created
March 11, 2019 23:48
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Rapidtide2 IndexError
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| (rapidtide) # dlurie@nx4 in ~/Software/rapidtide [16:26:10] | |
| $ rapidtide2 /home/despoB/dlurie/Projects/despolab_lesion/sandbox/sub-101_clean.nii.gz /home/despoB/dlurie/Projects/despolab_lesion/sandbox/rapidtide_testing/patient/clean_blaise_rerun/ --corrmask=/home/despoB/dlurie/Projects/despolab_lesion/data/patients/preproc/out/fmriprep/sub-101/func/sub-101_task-rest_acq-128px_run-01_bold_space-T1w_brainmask.nii.gz -L --passes=3 --despecklepasses=4 -r 10,10 -f 2.5 | |
| /home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/statsmodels/compat/pandas.py:56: FutureWarning: The pandas.core.datetools module is deprecated and will be removed in a future version. Please use the pandas.tseries module instead. | |
| from pandas.core import datetools | |
| /home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/rapidtide-1.7.0-py3.6.egg/rapidtide | |
| /home/despoB/dlurie/anaconda3/envs/rapidtide/bin/rapidtide2 version: v1.7.0 124-g5e5ed34 | |
| using standard scipy.fftpack | |
| numba exists | |
| memprofiler does not exist | |
| nibabel exists | |
| no aggressive optimization | |
| using numba if present | |
| Using /home/despoB/dlurie/Projects/despolab_lesion/data/patients/preproc/out/fmriprep/sub-101/func/sub-101_task-rest_acq-128px_run-01_bold_space-T1w_brainmask.nii.gz as mask file - corrmaskthresh will be ignored | |
| prefiltering to lfo band | |
| Will do 3 processing passes | |
| Will do 4 despeckling passes | |
| Correlations will be calculated over range 10.0 to 10.0 | |
| Will prefilter fMRI data with a gaussian kernel of 2.5 mm | |
| running single process - disabled shared memory use | |
| setting internal precision to double | |
| setting output precision to single | |
| input file is NIFTI | |
| oversample factor set to 4 | |
| 1278900 spatial locations, 300 timepoints | |
| startpoint set to minimum, (0) | |
| endppoint set to maximum, ( 299 ) | |
| applying gaussian spatial filter to timepoints 0 to 299 | |
| Percent complete: [############################################################] 100.000% | |
| validvoxels shape = 129597 | |
| original size = (1278900, 300) , trimmed size = (129597, 300) | |
| no regressor file specified - will use the global mean regressor | |
| used 60445 voxels to calculate global mean signal | |
| regressor start time, end time, and step 0.0 600.0 2.0 | |
| first fMRI point is at 0.0 seconds relative to time origin | |
| filtering to lfo band | |
| applying trapezoidal antialiasing filter | |
| allocating memory for correlation arrays (1278900, 0) (129597, 0) | |
| ********************* | |
| Pass number 1 | |
| checking reference regressor autocorrelation properties | |
| searching for sidelobes with amplitude > 0.1 with abs(lag) < 10.0 s | |
| no sidelobes found in range | |
| Significance estimation, pass 1 | |
| Traceback (most recent call last): | |
| File "/home/despoB/dlurie/anaconda3/envs/rapidtide/bin/rapidtide2", line 4, in <module> | |
| __import__('pkg_resources').run_script('rapidtide==1.7.0', 'rapidtide2') | |
| File "/home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/setuptools-27.2.0-py3.6.egg/pkg_resources/__init__.py", line 744, in run_script | |
| File "/home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/setuptools-27.2.0-py3.6.egg/pkg_resources/__init__.py", line 1499, in run_script | |
| File "/home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/rapidtide-1.7.0-py3.6.egg/EGG-INFO/scripts/rapidtide2", line 2377, in <module> | |
| main() | |
| File "/home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/rapidtide-1.7.0-py3.6.egg/EGG-INFO/scripts/rapidtide2", line 1747, in main | |
| rt_floattype=rt_floattype | |
| File "/home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/rapidtide-1.7.0-py3.6.egg/rapidtide/nullcorrpass.py", line 248, in getNullDistributionData | |
| rt_floattype=rt_floattype | |
| File "/home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/rapidtide-1.7.0-py3.6.egg/rapidtide/corrfit.py", line 388, in onecorrfit | |
| displayplots=displayplots) | |
| File "/home/despoB/dlurie/anaconda3/envs/rapidtide/lib/python3.6/site-packages/rapidtide-1.7.0-py3.6.egg/rapidtide/fit.py", line 573, in findmaxlag_gauss | |
| binwidth = thexcorr_x[1] - thexcorr_x[0] | |
| IndexError: index 1 is out of bounds for axis 0 with size 0 |
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