You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The participants were derived from 51 Terra projects assigned to AnVIL.
The attribute sets for participant were inconsistent across projects. Only 1 field was shared across most projects.
Mapping
Our intial mapping to a GDC-like graph is as follows:
Mapping effort blocked somewhat as we consider Family Relationship edges (below)
Discussion points
The Family Relationship edges are intricate.
Brother or Sister 767
proband 494
mother 406
father 396
Son or Daughter 363
Father 360
Mother 352
Proband 346
Nephew or Niece 312
Sibling 218
Affected 204
#N/A 151
Other 2nd Degree Relative 94
Brother 77
Sister 70
Parent 60
sibling 39
Brother or Sister in Law 37
Husband or Wife 33
Other 3rd Degree Relative 31
Not Related to the Proband 29
Other 4th Degree Relative 29
Maternal Aunt or Uncle 26
Cousin 26
Other 2nd degree relative 18
Other 3rd degree relative 15
Brother or Sister-in-law 13
Other Not Related to Proband 10
Other second degree relative 9
Paternal Grandparent 8
Not related to the Proband 8
Unaffected Sibling 8
affected sibling 8
Paternal Aunt or Uncle 7
Other not related to proband relative 5
Other forth degree relative 5
Other 4th degree relative 5
affected twin 4
brother 4
Brother or Sister-in-Law 4
Maternal Grandparent 3
Other third degree relative 3
Twin brother 2
Aunt or Uncle 2
Identical Twin of Proband 2
mother2/sister1 1
Mother1 1
father2 1
First Cousin 1
Affected2 1
DZ twin 1
Other fifth degree relative 1
Father1 1
Affected1 1
Twin sister 1
brother2 1
affected half-sib 1
sister2 1
Son or Daughter-in-law 1
ProbandBrother or Sister 1
Samples
The properties associated with sample diverged widely, consisting mainly of CRAM summary statistics
Mapping
Added Sample node
Added CramFile CraiFile nodes
Discussion points
Should we move the bulk of these attributes to the CramFile node?
Should we reprocess the CRAM files to create an agreed upon set of attributes?