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binarybana/Julia console

Created August 25, 2014 18:37
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Segfault in Julia
Raw
attached gdb backtrace
...
Loaded symbols for /lib/x86_64-linux-gnu/libdl.so.2
Reading symbols from /lib/x86_64-linux-gnu/libm.so.6...Reading symbols from /usr/lib/debug//lib/x86_64-linux-gnu/libm-2.19.so...done.
done.
Loaded symbols for /lib/x86_64-linux-gnu/libm.so.6
Reading symbols from /lib/x86_64-linux-gnu/librt.so.1...Reading symbols from /usr/lib/debug//lib/x86_64-linux-gnu/librt-2.19.so...done.
done.
Loaded symbols for /lib/x86_64-linux-gnu/librt.so.1
Reading symbols from /usr/lib/x86_64-linux-gnu/libstdc++.so.6...(no debugging symbols found)...done.
Loaded symbols for /usr/lib/x86_64-linux-gnu/libstdc++.so.6
Reading symbols from /lib/x86_64-linux-gnu/libgcc_s.so.1...(no debugging symbols found)...done.
Loaded symbols for /lib/x86_64-linux-gnu/libgcc_s.so.1
Reading symbols from /lib64/ld-linux-x86-64.so.2...Reading symbols from /usr/lib/debug//lib/x86_64-linux-gnu/ld-2.19.so...done.
done.
Loaded symbols for /lib64/ld-linux-x86-64.so.2
Reading symbols from /home/jason/src/julia/usr/bin/../lib/julia/sys.so...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/julia/sys.so
Reading symbols from /home/jason/src/julia/usr/bin/../lib/libopenblas.so...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/libopenblas.so
Reading symbols from /usr/lib/x86_64-linux-gnu/libgfortran.so.3...(no debugging symbols found)...done.
Loaded symbols for /usr/lib/x86_64-linux-gnu/libgfortran.so.3
Reading symbols from /usr/lib/x86_64-linux-gnu/libquadmath.so.0...(no debugging symbols found)...done.
Loaded symbols for /usr/lib/x86_64-linux-gnu/libquadmath.so.0
Reading symbols from /home/jason/src/julia/usr/bin/../lib/libpcre.so...(no debugging symbols found)...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/libpcre.so
Reading symbols from /home/jason/src/julia/usr/bin/../lib/libdSFMT.so...(no debugging symbols found)...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/libdSFMT.so
Reading symbols from /home/jason/src/julia/usr/bin/../lib/libgmp.so...(no debugging symbols found)...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/libgmp.so
Reading symbols from /home/jason/src/julia/usr/bin/../lib/libmpfr.so...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/libmpfr.so
Reading symbols from /home/jason/src/julia/usr/bin/../lib/libopenlibm.so...(no debugging symbols found)...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/libopenlibm.so
Reading symbols from /home/jason/src/julia/usr/bin/../lib/libRmath-julia.so...(no debugging symbols found)...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/libRmath-julia.so
Reading symbols from /home/jason/src/julia/usr/bin/../lib/libgrisu.so...(no debugging symbols found)...done.
Loaded symbols for /home/jason/src/julia/usr/bin/../lib/libgrisu.so
syscall () at ../sysdeps/unix/sysv/linux/x86_64/syscall.S:38
38 ../sysdeps/unix/sysv/linux/x86_64/syscall.S: No such file or directory.
(gdb) c
Continuing.
Program received signal SIGSEGV, Segmentation fault.
0x00007f8fb1afabad in ?? ()
(gdb) bt
#0 0x00007f8fb1afabad in ?? ()
#1 0x0000000006803930 in ?? ()
#2 0x0000000000000004 in ?? ()
#3 0x00007fffe761f208 in ?? ()
#4 0x0000000001d6d5a0 in ?? ()
#5 0x0000000001d6d5a0 in ?? ()
#6 0x19bc8f13551e2f00 in ?? ()
#7 0x0000000005b6d990 in ?? ()
#8 0x00000000038c52e0 in ?? ()
#9 0x0000000000000002 in ?? ()
#10 0x0000000006803930 in ?? ()
#11 0x00007fffe761f2b0 in ?? ()
#12 0x00007f8fb1afb571 in ?? ()
#13 0x00007fffe761f2b0 in ?? ()
#14 0x000000000000001a in ?? ()
#15 0x00007fffe761f2f0 in ?? ()
#16 0x0000000006803950 in ?? ()
#17 0x0000000000000000 in ?? ()
Raw
Julia console
julia> include(joinpath(Pkg.dir(), "OBC/test/testcase.jl"))
(1.8508481979370117,0.0008389949798583984)
julia> include(joinpath(Pkg.dir(), "OBC/test/testcase.jl"))
Warning: replacing module OBC
Warning: replacing module NSum
Warning: replacing module MPM
Warning: Method definition sum(Float64,) in module MPM at /home/jason/.julia/v0.4/OBC/src/mpm.jl:141 overwritten in module MPM at /home/jason/.julia/v0.4/OBC/src/mpm.jl:141.
Warning: replacing module SAMC
signal (11): Segmentation fault
ht_keyindex2 at dict.jl:503
broadcast! at broadcast.jl:600
quantile! at statistics.jl:498
quantile at statistics.jl:505
jlcall_quantile;38944 at (unknown line)
unknown function (ip: -1331530020)
jl_apply_generic at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
anonymous at /home/jason/.julia/v0.4/OBC/test/testcase.jl:5
unknown function (ip: -1331487832)
jl_trampoline at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
mapslices at abstractarray.jl:1231
unknown function (ip: -1331530020)
jl_apply_generic at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
mapslices at abstractarray.jl:1211
jlcall_mapslices;38906 at (unknown line)
unknown function (ip: -1331530020)
jl_apply_generic at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
unknown function (ip: -1330983377)
unknown function (ip: -1330982167)
unknown function (ip: -1330979217)
unknown function (ip: -1330982214)
unknown function (ip: -1330979217)
unknown function (ip: -1330978995)
unknown function (ip: -1330971853)
unknown function (ip: -1330971207)
unknown function (ip: -1330971100)
unknown function (ip: -1330888468)
unknown function (ip: -1330887853)
jl_load at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
jl_load_ at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
include at ./boot.jl:245
unknown function (ip: -1331530020)
jl_apply_generic at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
include_from_node1 at ./loading.jl:128
unknown function (ip: -1331530020)
jl_apply_generic at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
unknown function (ip: -1330983377)
unknown function (ip: -1330982167)
unknown function (ip: -1330979217)
unknown function (ip: -1330983119)
unknown function (ip: -1330888654)
jl_toplevel_eval at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
jl_f_top_eval at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
eval_user_input at REPL.jl:54
jlcall_eval_user_input;38684 at (unknown line)
unknown function (ip: -1331530020)
jl_apply_generic at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
anonymous at task.jl:96
unknown function (ip: -1331487832)
jl_trampoline at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
unknown function (ip: -1330937807)
unknown function (ip: -1330934994)
unknown function (ip: -1330936337)
unknown function (ip: -1330936239)
jl_handle_stack_switch at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
julia_trampoline at /home/jason/src/julia/usr/bin/../lib/libjulia-debug.so (unknown line)
unknown function (ip: 4203654)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 4199593)
unknown function (ip: 0)
Raw
versioinfo
julia> versioninfo()
Julia Version 0.4.0-dev+330
Commit 1b935b2 (2014-08-25 16:50 UTC)
DEBUG build
Platform Info:
System: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
WORD_SIZE: 64
BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Nehalem)
LAPACK: libopenblas
LIBM: libopenlibm
LLVM: libLLVM-3.3
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