Skip to content

Instantly share code, notes, and snippets.

View andreifoldes's full-sized avatar

Andrei Tamas Foldes andreifoldes

  • Cardiff
View GitHub Profile
Range Count
1060000000 1029447
1050000000 9997326
1040000000 9984846
1030000000 9981487
1020000000 9978689
1010000000 9978952
1000000000 9978825
990000000 9988693
980000000 9993601
@effigies
effigies / partial_permutation_testing.md
Created July 24, 2018 14:25
Markiewicz and Bohland, 2016 permutation testing

Partially-parametric permutation testing

Cluster thresholding in multi-voxel pattern analysis (MVPA) is an open problem, as many figures of merit are possible, few (if any) of which have been sufficiently analyzed to permit a parametric solution or a guarantee of compatibility with pre-computed simulations. Stelzer, et al. 2012 represents probably the most conservative approach, constructing voxel-wise and then cluster-wise null distributions at the group level, based on permuting the training labels at the individual level.

In Mapping the cortical representation of speech sounds in a syllable repetition task, we adapted this approach to skip the voxel-wise null distribution,