Ctrl+l
setwd(dir)
getwd()
remove(list = ls())
install.packages('fortunes') # install
#!/usr/bin/env bash | |
# A bash script for converting all the files in a directory to pyramidal tiff | |
# Pass the directory the images are stored in as an argument | |
# But it will put the images in the current directory ... to be fixed | |
if [ $# -lt 3 ]; then | |
echo 'Usage: tile <directory> <extension> <desired_prefix>' | |
else | |
echo 'Looking for all files in directory: $1/' |
# -*- coding: utf-8 -*- | |
__author__ = "Pingjun Chen" | |
__email__ = "chenpingjun@gmx.com" | |
import os, sys, pdb | |
def organize_images(txt_path, image_path): | |
with open(txt_path) as f: | |
content = f.readlines() |
# -*- coding: utf-8 -*- | |
__author__ = "Pingjun Chen" | |
__email__ = "chenpingjun@gmx.com" | |
import os, sys, pdb | |
import numpy as np | |
from scipy import misc | |
import matplotlib.pyplot as plt | |
from skimage import io | |
import openslide |
# -*- coding: utf-8 -*- | |
__author__ = "Pingjun Chen" | |
__email__ = "chenpingjun@gmx.com" | |
import os, sys, pdb | |
import json | |
# load json file | |
json_in = json.load(open('***.json')) |