- 2020/10/30 EBS容量設定を増加
- 2020/08/07 ドキュメント作成
このドキュメントは参考情報として提供されるものであり、動作は保証されない。
#!/bin/bash -x | |
. /etc/parallelcluster/cfnconfig | |
nvidia-smi | |
if [ $? = 0 ] ; then | |
CLUSTER_NAME=$(echo ${stack_name} | sed -e "s/parallelcluster-//g") | |
sudo pip install boto3 pynvml | |
wget -P /tmp https://s3.amazonaws.com/aws-bigdata-blog/artifacts/GPUMonitoring/gpumon.py | |
sed \ |
# -- coding: utf-8 -- | |
import boto3 | |
import logging | |
import json | |
TAG_KEY = 'ClusterName' | |
logger = logging.getLogger() | |
logger.setLevel(logging.INFO) |
import json | |
import logging | |
import base64 | |
import gzip | |
import urllib.request | |
LOG_STREAM = 'ip-10-0-1-xxx.i-08f68c623be216d6e.slurmctld' | |
SLACK_WEB_HOOK = 'https://hooks.slack.com/services/XXXX' | |
logger = logging.getLogger() |
#!/bin/bash -xe | |
# Based on this site: | |
# https://software.intel.com/content/www/us/en/develop/documentation/installation-guide-for-intel-oneapi-toolkits-linux/top/installation/install-using-package-managers/apt.html | |
# use wget to fetch the Intel repository public key | |
cd /tmp | |
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
# add to your apt sources keyring so that archives signed with this key will be trusted. | |
sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
# remove the public key |
#!/bin/bash | |
# module load intelmpi | |
module load openmpi | |
wget http://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-5.6.2.tar.gz | |
tar zxvf ./osu-micro-benchmarks-5.6.2.tar.gz | |
cd osu-micro-benchmarks-5.6.2/ | |
./configure CC=mpicc CXX=mpicxx | |
make -j 4 |
#!/bin/bash | |
wget https://ftp.gromacs.org/pub/benchmarks/ADH_bench_systems.tar.gz | |
tar xvzf ADH_bench_systems.tar.gz | |
docker run -ti --runtime nvidia -v $(pwd)/ADH/adh_cubic:/benchmark --workdir /benchmark nvcr.io/hpc/gromacs:2020.2 sh -c "gmx grompp -f pme_verlet.mdp" | |
time docker run -ti --runtime nvidia -v $(pwd)/ADH/adh_cubic:/benchmark --workdir /benchmark nvcr.io/hpc/gromacs:2020.2 sh -c "gmx mdrun -v -nsteps 100000 -resetstep 90000 -noconfout -ntmpi 4 -ntomp 10 -nb gpu -bonded gpu -pme gpu -npme 1 -nstlist 400 -s topol.tpr" |
#!/bin/bash -xe | |
# | |
# Usage: | |
# $ chmod +x set-up-nicedcv-centos.sh | |
# $ sudo ./set-up-nicedcv-centos.sh | |
# | |
# after executing this script, you need to set password for user | |
# e.g. | |
# sudo passwd centos | |
# |
testing VirtualFlow tutorial on AWS ParallelCluster
https://docs.virtual-flow.org/tutorials/-LdE94b2AVfBFT72zK-v/
[aws]