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ConradStack/gff3export.R

Last active July 12, 2016 20:45
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Export Granges(List) to gff3 with rtracklayer
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gff3export.R
import(rtracklayer)
# Where syn is a list of GRanges objects:
test = GenomicRangesList(syn)
export.gff(test,"~/tmp/tmp.gff3", version="3")
# ... or a single GRanges element:
export.gff(syn[[1]],"~/tmp/tmp.gff3", version="3")
# For more information on gff3, see:
# https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md
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