Created
August 15, 2013 04:45
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mapping of valid GenBank feature keys to Ontobee sequence ontology
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| VALID_FEATURE_KEYS = { | |
| "attenuator": {'so': 'http://purl.obolibrary.org/obo/SO_0000140'}, | |
| "C_region": {'so': 'http://purl.obolibrary.org/obo/SO_0100015'}, | |
| "CAAT_signal": {'so': 'http://purl.obolibrary.org/obo/SO_0000172'}, | |
| "CDS": {'so': 'http://purl.obolibrary.org/obo/SO_0000316'}, | |
| "centromere": {'so': 'http://purl.obolibrary.org/obo/SO_0000577'}, | |
| "D-loop": {'so': 'http://purl.obolibrary.org/obo/SO_0000297'}, | |
| "D_segment": {'so': 'http://purl.obolibrary.org/obo/SO_0000458'}, | |
| "enhancer": {'so': 'http://purl.obolibrary.org/obo/SO_0000165'}, | |
| "exon": {'so': 'http://purl.obolibrary.org/obo/SO_0000147'}, | |
| "GC_signal": {'so': 'http://purl.obolibrary.org/obo/SO_0000173'}, | |
| "gene": {'so': 'http://purl.obolibrary.org/obo/SO_0000704'}, | |
| "iDNA": {'so': 'http://purl.obolibrary.org/obo/SO_0000723'}, | |
| "intron": {'so': 'http://purl.obolibrary.org/obo/SO_0000188'}, | |
| "J_segment": {'so': 'http://purl.obolibrary.org/obo/SO_0000470'}, | |
| "LTR": {'so': 'http://purl.obolibrary.org/obo/SO_0000286'}, | |
| "mat_peptide": {'so': 'http://purl.obolibrary.org/obo/SO_0000419'}, | |
| "misc_binding": {'so': 'http://purl.obolibrary.org/obo/SO_0001091'}, | |
| "misc_difference": {'so': 'http://purl.obolibrary.org/obo/SO_0000413'}, | |
| "misc_feature": {'so': 'http://purl.obolibrary.org/obo/SO_0000110'}, | |
| "misc_recomb": {'so': 'http://purl.obolibrary.org/obo/SO_0000298'}, | |
| "misc_RNA": {'so': 'http://purl.obolibrary.org/obo/SO_0000863'}, | |
| "misc_signal": {'so': 'http://purl.obolibrary.org/obo/SO_0005836'}, | |
| "misc_structure": {'so': 'http://purl.obolibrary.org/obo/SO_0000142'}, | |
| "mobile_element": {'so': 'http://purl.obolibrary.org/obo/SO_0001037'}, | |
| "modified_base": {'so': 'http://purl.obolibrary.org/obo/SO_0000305'}, | |
| "mRNA": {'so': 'http://purl.obolibrary.org/obo/SO_0000234'}, | |
| "ncRNA": {'so': 'http://purl.obolibrary.org/obo/SO_0000655'}, | |
| "N_region": {'so': 'http://purl.obolibrary.org/obo/SO_0000563'}, | |
| "operon": {'so': 'http://purl.obolibrary.org/obo/SO_0000178'}, | |
| "oriT": {'so': 'http://purl.obolibrary.org/obo/SO_0000724'}, | |
| "polyA_signal": {'so': 'http://purl.obolibrary.org/obo/SO_0000551'}, | |
| "polyA_site": {'so': 'http://purl.obolibrary.org/obo/SO_0000553'}, | |
| "precursor_RNA": {'so': 'http://purl.obolibrary.org/obo/SO_0000185'}, | |
| "prim_transcript": {'so': 'http://purl.obolibrary.org/obo/SO_0000185'}, | |
| "primer_bind": {'so': 'http://purl.obolibrary.org/obo/SO_0005850'}, | |
| "promoter": {'so': 'http://purl.obolibrary.org/obo/SO_0000167'}, | |
| "protein_bind": {'so': 'http://purl.obolibrary.org/obo/SO_0000410'}, | |
| "RBS": {'so': 'http://purl.obolibrary.org/obo/SO_0000552'}, | |
| "repeat_region": {'so': 'http://purl.obolibrary.org/obo/SO_0000657'}, | |
| "rep_origin": {'so': 'http://purl.obolibrary.org/obo/SO_0000296'}, | |
| "rRNA": {'so': 'http://purl.obolibrary.org/obo/SO_0000252'}, | |
| "S_region": {'so': 'http://purl.obolibrary.org/obo/SO_0000301'}, | |
| "sig_peptide": {'so': 'http://purl.obolibrary.org/obo/SO_0000418'}, | |
| "source": {'so': 'http://purl.obolibrary.org/obo/SO_0001260'}, | |
| "stem_loop": {'so': 'http://purl.obolibrary.org/obo/SO_0000313'}, | |
| "STS": {'so': 'http://purl.obolibrary.org/obo/SO_0000331'}, | |
| "TATA_signal": {'so': 'http://purl.obolibrary.org/obo/SO_0000174'}, | |
| "telomere": {'so': 'http://purl.obolibrary.org/obo/SO_0000624'}, | |
| "terminator": {'so': 'http://purl.obolibrary.org/obo/SO_0000141'}, | |
| "tmRNA": {'so': 'http://purl.obolibrary.org/obo/SO_0000584'}, | |
| "transit_peptide": {'so': 'http://purl.obolibrary.org/obo/SO_0000725'}, | |
| "tRNA": {'so': 'http://purl.obolibrary.org/obo/SO_0000253'}, | |
| "unsure": {'so': 'http://purl.obolibrary.org/obo/SO_0001086'}, | |
| "V_region": {'so': 'http://purl.obolibrary.org/obo/SO_0000936'}, | |
| "V_segment": {'so': 'http://purl.obolibrary.org/obo/SO_0000538'}, | |
| "variation": {'so': 'http://purl.obolibrary.org/obo/SO_0001147'}, | |
| "3'UTR": {'so': 'http://purl.obolibrary.org/obo/SO_0000205'}, | |
| "5'UTR": {'so': 'http://purl.obolibrary.org/obo/SO_0000204'}, | |
| "-10_signal": {'so': 'http://purl.obolibrary.org/obo/SO_0000175'}, | |
| "-35_signal": {'so': 'http://purl.obolibrary.org/obo/SO_0000176'}, | |
| } |
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