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#!/bin/bash | |
export SLURM_HEADNODE_IPADDR=$(curl -sS http://169.254.169.254/latest/meta-data/local-ipv4) | |
export SLURM_HEADNODE_AWS_REGION=$(curl -sS http://169.254.169.254/latest/dynamic/instance-identity/document | jq -r '.region') | |
export COMPUTE_SG=@COMPUTESG@ | |
export COMPUTE_SUBNET_ID=@SUBNETID@ | |
export AWS_DEFAULT_MAC=$(curl -sS http://169.254.169.254/latest/meta-data/mac) | |
export AWS_SECURITY=$(curl -sS http://169.254.169.254/latest/meta-data/network/interfaces/macs/$AWS_DEFAULT_MAC/security-group-ids) | |
export AWS_AMI=@COMPUTEAMI@ | |
export AWS_KEYNAME=@KEYNAME@ |
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#!/bin/bash -xe | |
exec > >(tee /var/log/user-data.log|logger -t user-data -s 2>/dev/console) 2>&1 | |
sed -i "s|SELINUX=enforcing|SELINUX=permissive|g" /etc/selinux/config | |
setenforce 0 | |
sleep 180 | |
echo "192.168.0.100:/home /home nfs nfsvers=3,nodev,nosuid 0 0" >> /etc/fstab | |
echo "192.168.0.100:/opt/ohpc/pub /opt/ohpc/pub nfs nfsvers=3,nodev 0 0" >> /etc/fstab | |
mount -a | |
cp /home/.munge /etc/munge/munge.key | |
chown munge:munge /etc/munge/munge.key |
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#!/bin/bash | |
export SLURM_ROOT=/etc/slurm | |
export CLUSTER_REGION=$(curl -sS http://169.254.169.254/latest/dynamic/instance-identity/document | jq -r '.region') | |
export SLURM_POWER_LOG=$SLURM_ROOT/power_save.log | |
export PATH=$PATH:/usr/local/bin:/usr/bin | |
function aws_shutdown() | |
{ | |
COMPUTE_INSTANCE=$(aws ec2 describe-instances \ |
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#!/bin/bash | |
export SLURM_HEADNODE_IPADDR=$(curl -sS http://169.254.169.254/latest/meta-data/local-ipv4) | |
export SLURM_HEADNODE_AWS_REGION=$(curl -sS http://169.254.169.254/latest/dynamic/instance-identity/document | jq -r '.region') | |
export COMPUTE_SG=@COMPUTESG@ | |
export COMPUTE_SUBNET_ID=@SUBNETID@ | |
export AWS_DEFAULT_MAC=$(curl -sS http://169.254.169.254/latest/meta-data/mac) | |
export AWS_SECURITY=$(curl -sS http://169.254.169.254/latest/meta-data/network/interfaces/macs/$AWS_DEFAULT_MAC/security-group-ids) | |
export AWS_AMI=@COMPUTEAMI@ | |
export AWS_KEYNAME=@KEYNAME@ |
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ClusterName=pearc20 | |
ControlMachine=ip-192-168-0-100 | |
SlurmUser=slurm | |
SlurmctldPort=6817 | |
SlurmdPort=6818 | |
AuthType=auth/munge | |
StateSaveLocation=/var/spool/slurm/ctld | |
SlurmdSpoolDir=/var/spool/slurm/d | |
SwitchType=switch/none |
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ClusterName=pearc20 | |
ControlMachine=ip-192-168-0-100 | |
SlurmUser=slurm | |
SlurmctldPort=6817 | |
SlurmdPort=6818 | |
AuthType=auth/munge | |
StateSaveLocation=/var/spool/slurm/ctld | |
SlurmdSpoolDir=/var/spool/slurm/d | |
SwitchType=switch/none |
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#!/bin/bash | |
# Before compilation, need to build standalone version of ARMCI provided with NWChem | |
# To build: cd $NWCHEM_TOP/tools && ./install-armci-mpi | |
source /opt/intel/mkl/bin/mklvars.sh intel64 | |
source /opt/intel/impi/2018.4.274/intel64/bin/mpivars.sh | |
export FC=gfortran | |
export _FC=mpif90 |
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#!/bin/bash | |
source /opt/intel/mkl/bin/mklvars.sh intel64 | |
source /opt/intel/impi/2018.4.274/intel64/bin/mpivars.sh | |
export FC=gfortran | |
export _FC=mpif90 | |
export CC=gcc | |
export _CC=mpicc |
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Bootstrap: yum | |
OSVersion: 7 | |
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/ | |
Include: yum | |
%post | |
yum -y install yum-utils | |
yum-config-manager --add-repo https://yum.repos.intel.com/setup/intelproducts.repo | |
rpm --import https://yum.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB | |
yum -y update |
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Bootstrap: docker | |
From: centos:7.5.1804 | |
%post | |
yum-config-manager --add-repo https://yum.repos.intel.com/setup/intelproducts.repo | |
rpm --import https://yum.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB | |
yum -y update | |
yum -y install intel-mkl intel-mpi | |
yum -y install wget make which gcc gcc-gfortran | |
wget https://gitlab.com/QEF/q-e/-/archive/qe-6.3/q-e-qe-6.3.tar.gz |
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